Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

23708256 .. 23709601

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGGAGAAGAGAGGAATCTCAGCGCAATTTACCCGCAATTTCACTCAGAGTTTTGAGTTTTTTGAGAGCGAGAGAGAGAAGAAGAGAGAGAGAAGGCGGAGCTAGTGGTGGTGGTGAGCTCGGTTCTGTAGCTCGGTTGCGTCGAAGCACAATTGCAATGGAGGTCAATGGGAAATCTGTGGTGGCGGGACCTGCTAATGTTATTTTTCTGTCGACGATTTTGGGCCAGGATGGGTCAATGTCTGTTCATAAGTGTGACTGGAAGTGTCAGAATGAGCATGTCTGTGGGAATATGTATCGCTGCAAGGTGACTGGACTCACTCACATTTGTGACAAGAATTGCAACCAGAGGATTCTGTATGATAACCACAGCTCCCTTTGCCGGGCAAGTGGGAAGGTTTTCCCCCTTACACCAGTAGAGGAACAGGCAGTGAGAGGGGTCCGGAGGAAGCTTGAGTCAGATGCCCCTGTTGCCGACAATTGTTCTTTTAAGCGCAGACGGGATGCACAGTTCCATCCTTCTCCCTTCGAGAGATCCTTCACTGCTGCCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGACTTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

9.67

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	3 cut(s)	36, 99, 188
AclWI	GGATC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	384, 385
AjnI	CCWGG	1 cut(s)	228
AleI	CACNNNNGTG	1 cut(s)	330
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	6 cut(s)	104, 121, 134, 375, 454, 594
AluI	AGCT	6 cut(s)	104, 121, 134, 375, 454, 594
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	531
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	303, 548, 564
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	2 cut(s)	27, 498
AspS9I	GGNCC	3 cut(s)	191, 226, 442
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	128, 322
AvaII	GGWCC	2 cut(s)	191, 442
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	290, 535, 576
BccI	CCATC	3 cut(s)	227, 525, 572
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	2 cut(s)	105, 595
BfmI	CTRYAG	2 cut(s)	129, 562
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	304, 549, 565
BlsI	GCNGC	3 cut(s)	305, 550, 566
Bme1390I	CCNGG	2 cut(s)	230, 386
Bme18I	GGWCC	2 cut(s)	191, 442
BmgT120I	GGNCC	3 cut(s)	191, 226, 442
BmiI	GGNNCC	2 cut(s)	192, 443
BmrFI	CCNGG	2 cut(s)	230, 386
BmsI	GCATC	2 cut(s)	454, 496
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 385
Bse1I	ACTGG	4 cut(s)	266, 319, 416, 552
Bse3DI	GCAATG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	238, 511, 517
BseLI	CCNNNNNNNGG	2 cut(s)	384, 385
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	35, 61
BseNI	ACTGG	4 cut(s)	266, 319, 416, 552
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	290, 535, 576
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	385, 445
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	384, 385
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	536, 558
BspACI	CCGC	3 cut(s)	36, 99, 188
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	34, 60
BspEI	TCCGGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	192, 443
BspMAI	CTGCAG	1 cut(s)	566
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	4 cut(s)	266, 319, 416, 552
BssMI	GATC	2 cut(s)	536, 558
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	2 cut(s)	4, 79
BstDEI	CTNAG	2 cut(s)	21, 47
BstF5I	GGATG	3 cut(s)	238, 511, 517
BstHHI	GCGC	2 cut(s)	27, 498
BstKTI	GATC	2 cut(s)	539, 561
BstMBI	GATC	2 cut(s)	536, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 381, 473
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	228, 384
BstSFI	CTRYAG	2 cut(s)	129, 562
BstV1I	GCAGC	3 cut(s)	290, 535, 576
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	238, 511, 517
BtsI	GCAGTG	2 cut(s)	438, 543
BtsIMutI	CAGTG	2 cut(s)	438, 543
BveI	ACCTGC	1 cut(s)	202
CfoI	GCGC	2 cut(s)	27, 498
Cfr13I	GGNCC	3 cut(s)	191, 226, 442
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	281, 583
CviJI	RGCY	7 cut(s)	104, 121, 134, 228, 375, 454, 594
CviKI_1	RGCY	7 cut(s)	104, 121, 134, 228, 375, 454, 594
DdeI	CTNAG	2 cut(s)	21, 47
DpnI	GATC	2 cut(s)	538, 560
DpnII	GATC	2 cut(s)	536, 558
Eam1104I	CTCTTC	2 cut(s)	4, 79
EarI	CTCTTC	2 cut(s)	4, 79
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	191, 442
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	284, 586
FaiI	YATR	5 cut(s)	252, 282, 296, 363, 584
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	280, 582
FauI	CCCGC	2 cut(s)	43, 181
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	304, 549, 565
FokI	GGATG	3 cut(s)	245, 504, 518
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	304, 549, 565
FspBI	CTAG	2 cut(s)	105, 595
GlaI	GCGC	2 cut(s)	26, 497
GluI	GCNGC	3 cut(s)	304, 549, 565
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	2 cut(s)	385, 445
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	27, 498
Hin1II	CATG	2 cut(s)	284, 586
Hin6I	GCGC	2 cut(s)	25, 496
HinP1I	GCGC	2 cut(s)	25, 496
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	4 cut(s)	17, 318, 355, 458
HpaII	CCGG	2 cut(s)	385, 445
HphI	GGTGA	2 cut(s)	128, 322
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	4 cut(s)	50, 273, 463, 558
Hpy188III	TCNNGA	2 cut(s)	445, 532
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	147, 220
HpyAV	CCTTC	5 cut(s)	89, 391, 531, 538, 550
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	158, 306, 345, 509, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 381, 473
HpyF3I	CTNAG	2 cut(s)	21, 47
Hsp92II	CATG	2 cut(s)	284, 586
HspAI	GCGC	2 cut(s)	25, 496
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	536, 558
LmnI	GCTCC	2 cut(s)	101, 380
Lsp1109I	GCAGC	3 cut(s)	290, 535, 576
LweI	GCATC	2 cut(s)	454, 496
MaeI	CTAG	2 cut(s)	105, 595
MaeIII	GTNAC	3 cut(s)	257, 310, 332
MalI	GATC	2 cut(s)	538, 560
MboI	GATC	2 cut(s)	536, 558
MboII	GAAGA	3 cut(s)	21, 93, 96
MfeI	CAATTG	2 cut(s)	153, 481
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	5 cut(s)	28, 39, 153, 340, 481
MlyI	GAGTC	2 cut(s)	312, 467
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	7, 157, 345, 415, 431, 441
MroI	TCCGGA	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	3 cut(s)	255, 285, 330
MspI	CCGG	2 cut(s)	385, 445
MspR9I	CCNGG	2 cut(s)	230, 386
MunI	CAATTG	2 cut(s)	153, 481
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	194, 381, 473
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	536, 558
NlaIII	CATG	2 cut(s)	284, 586
NlaIV	GGNNCC	2 cut(s)	192, 443
NmuCI	GTSAC	3 cut(s)	257, 310, 332
NspI	RCATGY	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	17, 355
PkrI	GCNGC	3 cut(s)	305, 550, 566
PleI	GAGTC	2 cut(s)	312, 466
PpsI	GAGTC	2 cut(s)	312, 466
PpuMI	RGGWCCY	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	192, 443
PspPI	GGNCC	3 cut(s)	191, 226, 442
PspPPI	RGGWCCY	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	536
RseI	CAYNNNNRTG	3 cut(s)	255, 285, 330
SacI	GAGCTC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	304, 549, 565
Sau3AI	GATC	2 cut(s)	536, 558
Sau96I	GGNCC	3 cut(s)	191, 226, 442
SchI	GAGTC	2 cut(s)	312, 467
ScrFI	CCNGG	2 cut(s)	230, 386
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	454, 496
SfcI	CTRYAG	2 cut(s)	129, 562
SinI	GGWCC	2 cut(s)	191, 442
SmiMI	CAYNNNNRTG	3 cut(s)	255, 285, 330
SmlI	CTYRAG	2 cut(s)	455, 589
SmoI	CTYRAG	2 cut(s)	455, 589
Sse9I	AATT	5 cut(s)	28, 39, 153, 340, 481
SsiI	CCGC	3 cut(s)	36, 99, 188
SspMI	CTAG	2 cut(s)	105, 595
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	228, 384
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	145, 215, 531
TasI	AATT	5 cut(s)	28, 39, 153, 340, 481
TfiI	GAWTC	2 cut(s)	17, 355
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	2 cut(s)	438, 550
TseFI	GTSAC	3 cut(s)	257, 310, 332
TseI	GCWGC	3 cut(s)	303, 548, 564
Tsp45I	GTSAC	3 cut(s)	257, 310, 332
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	438, 550
VpaK11BI	GGWCC	2 cut(s)	191, 442
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	2 cut(s)	105, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.