Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

29899429 .. 29902719

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G321900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGAAAGTTATTTGCTGGCTTCATATGGGCCATGTTGCAATGGAGGTGGATGGCAAATCTGTGGTAGCAGGACCTACGAATGTTATTTTTCTGTCGACTATTTTGGGCCGAGATGGGTCAACTTCTGTTCACAAATGTGACTGGAAATGCCAGAACGAGCATGTCTGCGCGAATATGTATTGCTGCAAGCTAACTGGACTCACTCACATCTGTGACAAAAACTGTGACCAGAGGATCCTGTATGATAACCATAGCTCCCTTTGTCGAGCAAGCGGAAAGATTTTCCCCCTTACACCAGCAGAGGAACAGGCCGTGAGAGGGGTCCGGAGGAAGCTTGAGTCAGAGAACTCTTCTGCAGACAGTTGTTCTTCTAAGCGCAGACGGGATGCCCAGTTCCATCCTTCTCCTTTCGAGAGATCCTTCTCTACAGTCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGATATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

8.5

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	3 cut(s)	232, 245, 414
AfiI	CCNNNNNNNGG	1 cut(s)	321
AleI	CACNNNNGTG	2 cut(s)	138, 213
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	193, 258, 337, 477
AluI	AGCT	4 cut(s)	193, 258, 337, 477
AlwI	GGATC	3 cut(s)	232, 245, 414
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	3 cut(s)	31, 109, 312
ApeKI	GCWGC	2 cut(s)	186, 447
AspLEI	GCGC	2 cut(s)	173, 381
AspS9I	GGNCC	4 cut(s)	31, 74, 109, 325
AvaII	GGWCC	2 cut(s)	74, 325
BamHI	GGATCC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	173, 459
BccI	CCATC	4 cut(s)	47, 110, 408, 455
BceAI	ACGGC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	478
BfmI	CTRYAG	3 cut(s)	357, 429, 445
BisI	GCNGC	2 cut(s)	187, 448
BlsI	GCNGC	2 cut(s)	188, 449
Bme18I	GGWCC	2 cut(s)	74, 325
BmgT120I	GGNCC	4 cut(s)	31, 74, 109, 325
BmiI	GGNNCC	2 cut(s)	239, 326
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	359
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	3 cut(s)	149, 202, 394
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	327
BseGI	GGATG	3 cut(s)	58, 394, 400
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	149, 202, 394
BseXI	GCAGC	2 cut(s)	173, 459
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	33, 111, 314
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	321
BsnI	GGCC	3 cut(s)	33, 111, 314
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	237, 419, 441
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	3 cut(s)	33, 111, 314
BspEI	TCCGGA	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	239, 326
BspMAI	CTGCAG	2 cut(s)	361, 449
BspPI	GGATC	3 cut(s)	232, 245, 414
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	149, 202, 394
BssMI	GATC	3 cut(s)	237, 419, 441
Bst4CI	ACNGT	3 cut(s)	227, 365, 433
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	20, 191, 274
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	58, 394, 400
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	173, 381
BstKTI	GATC	3 cut(s)	240, 422, 444
BstMBI	GATC	3 cut(s)	237, 419, 441
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	357, 429, 445
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	173, 459
BstX2I	RGATCY	2 cut(s)	237, 419
BstYI	RGATCY	2 cut(s)	237, 419
BsuRI	GGCC	3 cut(s)	33, 111, 314
BtsCI	GGATG	3 cut(s)	58, 394, 400
Cac8I	GCNNGC	3 cut(s)	20, 191, 274
CfoI	GCGC	2 cut(s)	173, 381
Cfr13I	GGNCC	4 cut(s)	31, 74, 109, 325
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	3 cut(s)	35, 164, 466
CviJI	RGCY	8 cut(s)	22, 33, 111, 193, 258, 314, 337, 477
CviKI_1	RGCY	8 cut(s)	22, 33, 111, 193, 258, 314, 337, 477
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	239, 421, 443
DpnII	GATC	3 cut(s)	237, 419, 441
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	74, 325
EcoO109I	RGGNCCY	1 cut(s)	74
FaeI	CATG	3 cut(s)	38, 167, 469
FaiI	YATR	9 cut(s)	27, 29, 36, 165, 179, 246, 255, 467, 473
FatI	CATG	3 cut(s)	34, 163, 465
FauNDI	CATATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	187, 448
FokI	GGATG	3 cut(s)	65, 387, 401
Fsp4HI	GCNGC	2 cut(s)	187, 448
FspBI	CTAG	1 cut(s)	478
GlaI	GCGC	2 cut(s)	172, 380
GluI	GCNGC	2 cut(s)	187, 448
HaeIII	GGCC	3 cut(s)	33, 111, 314
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	2 cut(s)	173, 381
Hin1II	CATG	3 cut(s)	38, 167, 469
Hin6I	GCGC	2 cut(s)	171, 379
HinP1I	GCGC	2 cut(s)	171, 379
HincII	GTYRAC	2 cut(s)	99, 123
HindII	GTYRAC	2 cut(s)	99, 123
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	201, 341
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	99, 123, 133
Hpy188I	TCNGA	2 cut(s)	346, 441
Hpy188III	TCNNGA	2 cut(s)	328, 415
Hpy8I	GTNNAC	3 cut(s)	99, 123, 133
HpyAV	CCTTC	2 cut(s)	414, 433
HpyCH4III	ACNGT	3 cut(s)	227, 365, 433
HpyCH4V	TGCA	4 cut(s)	41, 189, 359, 447
HpyF3I	CTNAG	1 cut(s)	375
Hsp92II	CATG	3 cut(s)	38, 167, 469
HspAI	GCGC	2 cut(s)	171, 379
Kpn2I	TCCGGA	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	237, 419, 441
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	173, 459
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	478
MaeIII	GTNAC	3 cut(s)	140, 215, 227
MalI	GATC	3 cut(s)	239, 421, 443
MboI	GATC	3 cut(s)	237, 419, 441
MboII	GAAGA	3 cut(s)	16, 345, 363
MflI	RGATCY	2 cut(s)	237, 419
MlyI	GAGTC	2 cut(s)	195, 350
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	5 cut(s)	40, 228, 298, 314, 324
MroI	TCCGGA	1 cut(s)	327
MslI	CAYNNNNRTG	3 cut(s)	138, 213, 470
MspI	CCGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	173
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	3 cut(s)	237, 419, 441
NlaIII	CATG	3 cut(s)	38, 167, 469
NlaIV	GGNNCC	2 cut(s)	239, 326
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	3 cut(s)	140, 215, 227
NspI	RCATGY	1 cut(s)	167
OliI	CACNNNNGTG	2 cut(s)	138, 213
PkrI	GCNGC	2 cut(s)	188, 449
PleI	GAGTC	2 cut(s)	195, 349
PpsI	GAGTC	2 cut(s)	195, 349
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	239, 326
PspPI	GGNCC	4 cut(s)	31, 74, 109, 325
PspPPI	RGGWCCY	1 cut(s)	74
PstI	CTGCAG	2 cut(s)	361, 449
PsuI	RGATCY	2 cut(s)	237, 419
RseI	CAYNNNNRTG	3 cut(s)	138, 213, 470
SalI	GTCGAC	1 cut(s)	97
SatI	GCNGC	2 cut(s)	187, 448
Sau3AI	GATC	3 cut(s)	237, 419, 441
Sau96I	GGNCC	4 cut(s)	31, 74, 109, 325
SchI	GAGTC	2 cut(s)	195, 350
SetI	ASST	6 cut(s)	51, 79, 195, 260, 339, 479
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	3 cut(s)	357, 429, 445
SinI	GGWCC	2 cut(s)	74, 325
SmiMI	CAYNNNNRTG	3 cut(s)	138, 213, 470
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	227, 365, 433
TaqI	TCGA	3 cut(s)	98, 268, 414
TseFI	GTSAC	3 cut(s)	140, 215, 227
TseI	GCWGC	2 cut(s)	186, 447
Tsp45I	GTSAC	3 cut(s)	140, 215, 227
TspDTI	ATGAA	2 cut(s)	14, 17
VpaK11BI	GGWCC	2 cut(s)	74, 325
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.