Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

21056248 .. 21056550

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTACCTCTGCAAGCTAACTGGCGCCACTCACATCTGTGACAAAAACTGTGATCAGAGGATTGTGTATGATAACCATAGCTCCCTTTGCCGGGCAAGCCGAAAGATTTTCCCCCTTACACAAGTAGAGGAACAGGCTGTGAGAGGGGTCCGGAGGAAGCTTGAGTCGGAGAACTCTTCTGCAGACAGTTGCTCTTCTAAGCGCAGACGGGATGCCCAGCTCCATCCTTCTCCCTTCGAGCGATCCTTCACTACTGCCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGATATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.26

Weight (kDa)

8.85

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	150
AclWI	GGATC	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	90, 91
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	5 cut(s)	16, 81, 160, 220, 300
AluI	AGCT	5 cut(s)	16, 81, 160, 220, 300
AlwI	GGATC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	26, 204
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	231, 278
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	180, 268
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	25, 149
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 91
Bse1I	ACTGG	2 cut(s)	25, 258
BseAI	TCCGGA	1 cut(s)	150
BseGI	GGATG	2 cut(s)	217, 223
BseLI	CCNNNNNNNGG	2 cut(s)	90, 91
BseNI	ACTGG	2 cut(s)	25, 258
BseXI	GCAGC	1 cut(s)	282
BseYI	CCCAGC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	91, 151
BslI	CCNNNNNNNGG	2 cut(s)	90, 91
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	52, 242, 264
BspEI	TCCGGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	25, 149
BspMAI	CTGCAG	2 cut(s)	184, 272
BspPI	GGATC	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	25, 258
BssMI	GATC	3 cut(s)	52, 242, 264
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	50, 188
Bst6I	CTCTTC	2 cut(s)	181, 199
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	14, 97
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	217, 223
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 204
BstKTI	GATC	3 cut(s)	55, 245, 267
BstMBI	GATC	3 cut(s)	52, 242, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 96
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	180, 268
BstV1I	GCAGC	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	217, 223
Cac8I	GCNNGC	2 cut(s)	14, 97
CfoI	GCGC	2 cut(s)	26, 204
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	16, 81, 99, 137, 160, 220, 300
CviKI_1	RGCY	7 cut(s)	16, 81, 99, 137, 160, 220, 300
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	198
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	3 cut(s)	54, 244, 266
DpnII	GATC	3 cut(s)	52, 242, 264
Eam1104I	CTCTTC	2 cut(s)	181, 199
EarI	CTCTTC	2 cut(s)	181, 199
Eco47I	GGWCC	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
FaeI	CATG	1 cut(s)	292
FaiI	YATR	4 cut(s)	69, 78, 290, 296
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	210, 224
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	2 cut(s)	25, 203
GluI	GCNGC	1 cut(s)	271
GsaI	CCCAGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	27
HapII	CCGG	2 cut(s)	91, 151
HhaI	GCGC	2 cut(s)	26, 204
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	24, 202
HinP1I	GCGC	2 cut(s)	24, 202
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	91, 151
Hpy188I	TCNGA	3 cut(s)	57, 169, 264
Hpy188III	TCNNGA	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	237, 244, 256
HpyCH4III	ACNGT	2 cut(s)	50, 188
HpyCH4V	TGCA	3 cut(s)	12, 182, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 96
HpyF3I	CTNAG	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	24, 202
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	52, 242, 264
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	86, 225
LpnPI	CCDG	6 cut(s)	6, 104, 119, 164, 230, 271
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	54, 244, 266
MboI	GATC	3 cut(s)	52, 242, 264
MboII	GAAGA	2 cut(s)	168, 186
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	147, 259
MnlI	CCTC	5 cut(s)	17, 51, 121, 137, 147
MroI	TCCGGA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	36, 293
MspI	CCGG	2 cut(s)	91, 151
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	87, 96
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	52, 242, 264
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	25, 149
NmuCI	GTSAC	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	172
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	25, 149
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	184, 272
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	36, 293
SapI	GCTCTTC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	3 cut(s)	52, 242, 264
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	6 cut(s)	9, 18, 83, 162, 222, 302
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	180, 268
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	36, 293
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	50, 188
TaqI	TCGA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	148
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.