Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

32026188 .. 32028792

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1231200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAACATGATCGGTTTGCAATGGAGGTGGATGGCAATTCTGTGGTGGCAGGACCAACGAATGTTGTATATCTGTCGACAATCTTGGGCCGTGATGGGTCAAATCCTGTGCACAAATGTGACTGGAAATGTCAGAACGAGCACGTCTGCGCGAATATGTACCTCTGCAAGCTAACTGGAGCCACTCACATCTGTGACAAAAACTGTGATCAGAGGATCCTGTATGATAACCATAGCTCCCTTTGCCGGGCAAGCGGAAAGATTTTCCCCCTTACACAAGTAGAGGAACAGGCTGTGAGAGGGGTCCGGAGGAAGCATGAGTCGGAGAACTCTTCTGCGGACAGTTGCTCTTCTAAGCGCAGACGGGATGCCCAGCTCCATCCTTCTCCCTTCGAGCGATCCTTCACTACTGCCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGATATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

7.02

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	2 cut(s)	255, 338
AclWI	GGATC	3 cut(s)	211, 224, 393
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	246, 247
AjiI	CACGTC	1 cut(s)	145
AleI	CACNNNNGTG	2 cut(s)	117, 192
AluBI	AGCT	4 cut(s)	172, 237, 376, 456
AluI	AGCT	4 cut(s)	172, 237, 376, 456
Alw21I	GWGCWC	2 cut(s)	114, 144
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	211, 224, 393
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	152, 360
AspS9I	GGNCC	3 cut(s)	53, 88, 304
AsuC2I	CCSGG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	53, 304
BaeGI	GKGCMC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	114, 144
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	4 cut(s)	26, 89, 387, 434
BceAI	ACGGC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	53, 304
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	53, 88, 304
BmiI	GGNNCC	3 cut(s)	181, 218, 305
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	3 cut(s)	128, 181, 414
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	306
BseGI	GGATG	3 cut(s)	37, 373, 379
BseLI	CCNNNNNNNGG	2 cut(s)	246, 247
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	3 cut(s)	128, 181, 414
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	114, 144
BsiSI	CCGG	2 cut(s)	247, 307
BslI	CCNNNNNNNGG	2 cut(s)	246, 247
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	114, 144
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	10, 208, 216, 398, 420
BspACI	CCGC	2 cut(s)	255, 338
BspANI	GGCC	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	181, 218, 305
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	3 cut(s)	211, 224, 393
BspQI	GCTCTTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	128, 181, 414
BssMI	GATC	5 cut(s)	10, 208, 216, 398, 420
Bst4CI	ACNGT	2 cut(s)	206, 344
Bst6I	CTCTTC	2 cut(s)	337, 355
BstC8I	GCNNGC	2 cut(s)	170, 253
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	37, 373, 379
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	152, 360
BstKTI	GATC	5 cut(s)	13, 211, 219, 401, 423
BstMBI	GATC	5 cut(s)	10, 208, 216, 398, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 252
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	37, 373, 379
Cac8I	GCNNGC	2 cut(s)	170, 253
CfoI	GCGC	2 cut(s)	152, 360
Cfr13I	GGNCC	3 cut(s)	53, 88, 304
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	3 cut(s)	8, 317, 445
CviJI	RGCY	7 cut(s)	90, 172, 182, 237, 293, 376, 456
CviKI_1	RGCY	7 cut(s)	90, 172, 182, 237, 293, 376, 456
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	5 cut(s)	12, 210, 218, 400, 422
DpnII	GATC	5 cut(s)	10, 208, 216, 398, 420
Eam1104I	CTCTTC	2 cut(s)	337, 355
EarI	CTCTTC	2 cut(s)	337, 355
Eco47I	GGWCC	2 cut(s)	53, 304
FaeI	CATG	3 cut(s)	11, 320, 448
FaiI	YATR	8 cut(s)	9, 70, 158, 225, 234, 318, 446, 452
FatI	CATG	3 cut(s)	7, 316, 444
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	3 cut(s)	44, 366, 380
Fsp4HI	GCNGC	1 cut(s)	427
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	2 cut(s)	151, 359
GluI	GCNGC	1 cut(s)	427
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	247, 307
HhaI	GCGC	2 cut(s)	152, 360
Hin1II	CATG	3 cut(s)	11, 320, 448
Hin6I	GCGC	2 cut(s)	150, 358
HinP1I	GCGC	2 cut(s)	150, 358
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	2 cut(s)	247, 307
Hpy166II	GTNNAC	2 cut(s)	78, 112
Hpy188I	TCNGA	4 cut(s)	135, 213, 325, 420
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	2 cut(s)	78, 112
HpyAV	CCTTC	3 cut(s)	393, 400, 412
HpyCH4III	ACNGT	2 cut(s)	206, 344
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	20, 112, 168, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 252
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	11, 320, 448
HspAI	GCGC	2 cut(s)	150, 358
Kpn2I	TCCGGA	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	10, 208, 216, 398, 420
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	3 cut(s)	179, 242, 381
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	119, 194
MalI	GATC	5 cut(s)	12, 210, 218, 400, 422
MboI	GATC	5 cut(s)	10, 208, 216, 398, 420
MboII	GAAGA	2 cut(s)	324, 342
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	114, 144
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	303, 415
MnlI	CCTC	6 cut(s)	19, 173, 207, 277, 293, 303
MroI	TCCGGA	1 cut(s)	306
MslI	CAYNNNNRTG	3 cut(s)	117, 192, 449
MspI	CCGG	2 cut(s)	247, 307
MspR9I	CCNGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	243, 252
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	5 cut(s)	10, 208, 216, 398, 420
NlaIII	CATG	3 cut(s)	11, 320, 448
NlaIV	GGNNCC	3 cut(s)	181, 218, 305
NmuCI	GTSAC	2 cut(s)	119, 194
OliI	CACNNNNGTG	2 cut(s)	117, 192
PciSI	GCTCTTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	428
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	372
PspN4I	GGNNCC	3 cut(s)	181, 218, 305
PspPI	GGNCC	3 cut(s)	53, 88, 304
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	3 cut(s)	117, 192, 449
SalI	GTCGAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	355
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	5 cut(s)	10, 208, 216, 398, 420
Sau96I	GGNCC	3 cut(s)	53, 88, 304
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	114, 144
SetI	ASST	7 cut(s)	30, 147, 165, 174, 239, 378, 458
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	53, 304
SmiMI	CAYNNNNRTG	3 cut(s)	117, 192, 449
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	255, 338
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	206, 344
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	77, 393
TasI	AATT	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	119, 194
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	2 cut(s)	119, 194
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	53, 304
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.