Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

36107644 .. 36110324

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1303200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTACCTCTGCAAGCTAACTGGAGCCACTCACATCTGTGACAAAAACTGTGATCAGAGGATCCTGTATGATAACCATAGCTCCCTTTGCCGGGCAAGCGGAAAGATTTTCCCCCTTACACAGGTAGAGGAACAGGCTGTGAGAGGGGTCCGGAGGAAGCTTGAGTCGGATAGCTCTTCTGCAGACAGTTGCTCTTCTAAGCGCAGACGGGATGCCCAGTTCCATCCTTCTCCCTTCGAGAGATCCTTCACTACTGCCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGATATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

8.6

Isoelectric Point (pI)

73.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	55, 68, 237
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	90, 91, 121
AleI	CACNNNNGTG	1 cut(s)	36
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	16, 81, 160, 174, 300
AluI	AGCT	5 cut(s)	16, 81, 160, 174, 300
AlwI	GGATC	3 cut(s)	55, 68, 237
Aor13HI	TCCGGA	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	231, 278
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	180, 268
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	25, 62, 149
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 91, 121
Bse1I	ACTGG	3 cut(s)	25, 217, 258
BseAI	TCCGGA	1 cut(s)	150
BseGI	GGATG	2 cut(s)	217, 223
BseLI	CCNNNNNNNGG	3 cut(s)	90, 91, 121
BseNI	ACTGG	3 cut(s)	25, 217, 258
BseXI	GCAGC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	91, 151
BslI	CCNNNNNNNGG	3 cut(s)	90, 91, 121
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	52, 60, 242, 264
BspACI	CCGC	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	25, 62, 149
BspMAI	CTGCAG	2 cut(s)	184, 272
BspPI	GGATC	3 cut(s)	55, 68, 237
BspQI	GCTCTTC	2 cut(s)	181, 199
BsrI	ACTGG	3 cut(s)	25, 217, 258
BssMI	GATC	4 cut(s)	52, 60, 242, 264
Bst4CI	ACNGT	2 cut(s)	50, 188
Bst6I	CTCTTC	2 cut(s)	181, 199
BstC8I	GCNNGC	2 cut(s)	14, 97
BstDEI	CTNAG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	217, 223
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	55, 63, 245, 267
BstMBI	GATC	4 cut(s)	52, 60, 242, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 96
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	180, 268
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	60, 242
BstYI	RGATCY	2 cut(s)	60, 242
BtsCI	GGATG	2 cut(s)	217, 223
Cac8I	GCNNGC	2 cut(s)	14, 97
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	16, 26, 81, 137, 160, 174, 300
CviKI_1	RGCY	7 cut(s)	16, 26, 81, 137, 160, 174, 300
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	54, 62, 244, 266
DpnII	GATC	4 cut(s)	52, 60, 242, 264
Eam1104I	CTCTTC	2 cut(s)	181, 199
EarI	CTCTTC	2 cut(s)	181, 199
Eco47I	GGWCC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	292
FaiI	YATR	4 cut(s)	69, 78, 290, 296
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	210, 224
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	42
HapII	CCGG	2 cut(s)	91, 151
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	91, 151
Hpy188I	TCNGA	3 cut(s)	57, 169, 264
Hpy188III	TCNNGA	2 cut(s)	151, 238
HpyAV	CCTTC	3 cut(s)	237, 244, 256
HpyCH4III	ACNGT	2 cut(s)	50, 188
HpyCH4V	TGCA	3 cut(s)	12, 182, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 96
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 60, 242, 264
LguI	GCTCTTC	2 cut(s)	181, 199
LmnI	GCTCC	2 cut(s)	23, 86
LpnPI	CCDG	8 cut(s)	6, 77, 104, 107, 119, 164, 230, 271
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	4 cut(s)	54, 62, 244, 266
MboI	GATC	4 cut(s)	52, 60, 242, 264
MboII	GAAGA	2 cut(s)	168, 186
MflI	RGATCY	2 cut(s)	60, 242
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	147, 259
MnlI	CCTC	5 cut(s)	17, 51, 121, 137, 147
MroI	TCCGGA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	36, 293
MspI	CCGG	2 cut(s)	91, 151
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	87, 96
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	52, 60, 242, 264
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	3 cut(s)	25, 62, 149
NmuCI	GTSAC	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	36
PciSI	GCTCTTC	2 cut(s)	181, 199
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	25, 62, 149
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	184, 272
PsuI	RGATCY	2 cut(s)	60, 242
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	36, 293
SapI	GCTCTTC	2 cut(s)	181, 199
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	52, 60, 242, 264
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	9, 18, 83, 126, 162, 176, 302
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	180, 268
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	36, 293
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	50, 188
TaqI	TCGA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.