Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008457

Physical Location & Seq

Genomic Coordinates Forward (+)

66162796 .. 66165327

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG455900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGTCAATGGGAAATCTGTGGTAGCAGCACCTGCTAATGTTATTTTTCTGTCGACAATTTTGGGACGGGATGGGTCAATGTCTGTTCATAAGTGTGACTGGAAGTGTCAGAATGAGCATGTCTGTGGGAATATGTATCGCTGCAAGGTGACTGGACTCACTCACATCTGTGACAAGAATTGCAACCAGAGGATTCTGTATGATAACCATAGCTCTCTTTGCCGGGCAAGCGGGAAGGTTTTCCCCCTTACACCAGTAGAGGAACAGGCAGTGAGAGGGGTCCGGAGGAAGCATGAGTCAGAGGCCCCTGCTGCTGCAGACAATTGTTCCTTTAAGCGCAGACGGGATGCACAGCTCCATCCTTCTCCTTTCGAGAGATCCTTCACTACTGCCAGTCTGATCTGCAGCAAAGTTGGAGATGGCATGGACTTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.14

Weight (kDa)

8.78

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49550 AT5G24610
fragaria_vesca	FvH4_7g33300
malus_domestica	MD01G1231200.v1.1 MD07G1303200.v1.1
prunus_persica	Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1 Prupe.2G321900_v2.0.a1
pyrus_communis	pycom01g23920
rosa_chinensis	RchiOBHm_Chr1g0383281
rosa_multiflora	Rmu_sc0007173.1_g000021 Rmu_sc0014196.1_g000005
rosa_roxburghii	Rroxscaffold_4G00277440
rosa_rugosa	Rorug01G0440300 Rorug01G0440300
rosa_samantha	Rh1AG465800 Rh1BG423200 Rh1CG436400 Rh1DG455900
rosa_wichuraiana	Rw1G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	216, 358, 438
AluI	AGCT	3 cut(s)	216, 358, 438
AlwI	GGATC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	5 cut(s)	29, 144, 314, 317, 408
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	283, 307
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	41, 131, 301, 304, 420
BccI	CCATC	3 cut(s)	68, 369, 416
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	1 cut(s)	439
BfmI	CTRYAG	2 cut(s)	318, 406
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	5 cut(s)	30, 145, 315, 318, 409
BlsI	GCNGC	5 cut(s)	31, 146, 316, 319, 410
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	283, 307
BmiI	GGNNCC	2 cut(s)	284, 309
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	285
Bse1I	ACTGG	4 cut(s)	107, 160, 257, 396
BseAI	TCCGGA	1 cut(s)	285
BseGI	GGATG	3 cut(s)	79, 355, 361
BseNI	ACTGG	4 cut(s)	107, 160, 257, 396
BseXI	GCAGC	5 cut(s)	41, 131, 301, 304, 420
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	226, 286
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	308
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	380, 402
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	308
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	284, 309
BspMAI	CTGCAG	2 cut(s)	322, 410
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	375
BsrI	ACTGG	4 cut(s)	107, 160, 257, 396
BssMI	GATC	2 cut(s)	380, 402
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	79, 355, 361
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	383, 405
BstMBI	GATC	2 cut(s)	380, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 222, 231, 314
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	2 cut(s)	318, 406
BstV1I	GCAGC	5 cut(s)	41, 131, 301, 304, 420
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	79, 355, 361
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	283, 307
CviAII	CATG	3 cut(s)	122, 296, 427
CviJI	RGCY	4 cut(s)	216, 308, 358, 438
CviKI_1	RGCY	4 cut(s)	216, 308, 358, 438
DpnI	GATC	2 cut(s)	382, 404
DpnII	GATC	2 cut(s)	380, 402
Eco47I	GGWCC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	307
FaeI	CATG	3 cut(s)	125, 299, 430
FaiI	YATR	7 cut(s)	93, 123, 137, 204, 213, 297, 428
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	121, 295, 426
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	30, 145, 315, 318, 409
FokI	GGATG	3 cut(s)	86, 348, 362
Fsp4HI	GCNGC	5 cut(s)	30, 145, 315, 318, 409
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	5 cut(s)	30, 145, 315, 318, 409
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	2 cut(s)	226, 286
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	125, 299, 430
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	159, 196, 299
HpaII	CCGG	2 cut(s)	226, 286
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	114, 304, 402
Hpy188III	TCNNGA	2 cut(s)	286, 376
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	232, 375, 394
HpyCH4V	TGCA	5 cut(s)	147, 186, 320, 353, 408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 222, 231, 314
Hsp92II	CATG	3 cut(s)	125, 299, 430
HspAI	GCGC	1 cut(s)	340
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	380, 402
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	5 cut(s)	41, 131, 301, 304, 420
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	98, 151, 173
MalI	GATC	2 cut(s)	382, 404
MboI	GATC	2 cut(s)	380, 402
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	3 cut(s)	60, 181, 325
MlyI	GAGTC	2 cut(s)	153, 308
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	186, 256, 272, 282, 298
MroI	TCCGGA	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	3 cut(s)	96, 126, 171
MspI	CCGG	2 cut(s)	226, 286
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	35, 222, 231, 314
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	380, 402
NlaIII	CATG	3 cut(s)	125, 299, 430
NlaIV	GGNNCC	2 cut(s)	284, 309
NmuCI	GTSAC	3 cut(s)	98, 151, 173
NspI	RCATGY	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	31, 146, 316, 319, 410
PleI	GAGTC	2 cut(s)	153, 307
PpsI	GAGTC	2 cut(s)	153, 307
PspN4I	GGNNCC	2 cut(s)	284, 309
PspPI	GGNCC	2 cut(s)	283, 307
PstI	CTGCAG	2 cut(s)	322, 410
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	380
RseI	CAYNNNNRTG	3 cut(s)	96, 126, 171
SalI	GTCGAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	5 cut(s)	30, 145, 315, 318, 409
Sau3AI	GATC	2 cut(s)	380, 402
Sau96I	GGNCC	2 cut(s)	283, 307
SchI	GAGTC	2 cut(s)	153, 308
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	7 cut(s)	9, 37, 153, 218, 243, 360, 440
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	318, 406
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	3 cut(s)	96, 126, 171
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	60, 181, 325
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	225
TaqI	TCGA	2 cut(s)	56, 375
TasI	AATT	3 cut(s)	60, 181, 325
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	3 cut(s)	98, 151, 173
TseI	GCWGC	5 cut(s)	29, 144, 314, 317, 408
Tsp45I	GTSAC	3 cut(s)	98, 151, 173
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.