MD00G1005300.v1.1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015879
Physical Location & Seq
Reverse (-)
782936 .. 783247
312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1005300.v1.1.491

Sequence Viewer

Length: 312 bp
ATGGCATCAAGAAAACTGGCAGATGCGGCCTCATGGTACTGCGCCACTGCCCTACTAGCCTTGATCTTGTTTGCTTCCATCAGAGAGAACAGTTCTACGCCAGACAACGACGACTTGGTTCGAGGGAAACACTTCAATGACTTCATGACCAACCGGCCGTGTGATGAAATATATGTCGTCGGAGAAGGTGAGACACTCCACACCATCAGTGACAAGTGCGGCGACCCATACATCGTGGAGCGCAACCCTCATATCCATGATCCGGACGATGTTTTCCCTGGACTAGTCATCAAGATCACTCCTACCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

4.76

Isoelectric Point (pI)

17.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 2 cut(s) 26, 219
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 155
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 283
AjnI CCWGG 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 2 cut(s) 27, 155
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 44, 243
AsuHPI GGTGA 1 cut(s) 200
BccI CCATC 2 cut(s) 86, 212
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 2 cut(s) 56, 284
BisI GCNGC 2 cut(s) 27, 220
BlsI GCNGC 2 cut(s) 28, 221
Bme1390I CCNGG 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 13, 14
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 29, 157
BsiEI CGRYCG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 154, 263
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 2 cut(s) 29, 157
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 63, 259, 294
BspACI CCGC 2 cut(s) 26, 219
BspANI GGCC 2 cut(s) 29, 157
BspEI TCCGGA 1 cut(s) 262
BspHI TCATGA 1 cut(s) 144
BspPI GGATC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 3 cut(s) 63, 259, 294
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 92
BstHHI GCGC 2 cut(s) 44, 243
BstKTI GATC 3 cut(s) 66, 262, 297
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 63, 259, 294
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 26, 56
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 2 cut(s) 29, 157
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 214
CciI TCATGA 1 cut(s) 144
CfoI GCGC 2 cut(s) 44, 243
Cfr10I RCCGGY 1 cut(s) 153
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 33, 145, 257
CviJI RGCY 3 cut(s) 29, 59, 157
CviKI_1 RGCY 3 cut(s) 29, 59, 157
CviQI GTAC 1 cut(s) 37
DpnI GATC 3 cut(s) 65, 261, 296
DpnII GATC 3 cut(s) 63, 259, 294
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 3 cut(s) 36, 148, 260
FaiI YATR 7 cut(s) 34, 146, 172, 174, 229, 252, 258
FatI CATG 3 cut(s) 32, 144, 256
Fnu4HI GCNGC 2 cut(s) 27, 220
Fsp4HI GCNGC 2 cut(s) 27, 220
FspBI CTAG 2 cut(s) 56, 284
GlaI GCGC 2 cut(s) 43, 242
GluI GCNGC 2 cut(s) 27, 220
HaeIII GGCC 2 cut(s) 29, 157
HapII CCGG 2 cut(s) 154, 263
HhaI GCGC 2 cut(s) 44, 243
Hin1II CATG 3 cut(s) 36, 148, 260
Hin6I GCGC 2 cut(s) 42, 241
HinP1I GCGC 2 cut(s) 42, 241
HpaII CCGG 2 cut(s) 154, 263
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 83, 182
Hpy188III TCNNGA 4 cut(s) 9, 145, 263, 292
Hpy99I CGWCG 2 cut(s) 113, 182
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 56
Hsp92II CATG 3 cut(s) 36, 148, 260
HspAI GCGC 2 cut(s) 42, 241
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 63, 259, 294
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 2, 114, 167, 264, 276, 291
LweI GCATC 2 cut(s) 13, 14
MaeI CTAG 2 cut(s) 56, 284
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 65, 261, 296
MboI GATC 3 cut(s) 63, 259, 294
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 40, 116, 258
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 135, 255
MspI CCGG 2 cut(s) 154, 263
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 26, 56
NdeII GATC 3 cut(s) 63, 259, 294
NlaIII CATG 3 cut(s) 36, 148, 260
NmuCI GTSAC 1 cut(s) 209
PagI TCATGA 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 28, 221
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 135, 255
SatI GCNGC 2 cut(s) 27, 220
Sau3AI GATC 3 cut(s) 63, 259, 294
ScrFI CCNGG 1 cut(s) 279
SetI ASST 1 cut(s) 190
SfaNI GCATC 2 cut(s) 13, 14
SmiMI CAYNNNNRTG 2 cut(s) 135, 255
SpeI ACTAGT 1 cut(s) 283
SsiI CCGC 2 cut(s) 26, 219
SspMI CTAG 2 cut(s) 56, 284
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 121
TauI GCSGC 2 cut(s) 29, 222
TscAI CASTG 2 cut(s) 52, 214
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 133, 180
TspRI CASTG 2 cut(s) 52, 214
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 2 cut(s) 56, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.