Rroxscaffold_4G00282030

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015879
Physical Location & Seq
Forward (+)
4183184 .. 4183486
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282030.1

Sequence Viewer

Length: 303 bp
ATGGCTGACGCAGCTTCATGGTACTGCGCTACAATTCTACTAGCTCTAATCCTTCTGGCTTCTATAAGAGAGAGCTCGAATTCCACGACAGACGATGATTCCGTCCGAGGGAAACAGTTCTTGCGGACGAACCGTCCCTGCGACGAAATCTATGTCGTCGGAGAAGGTGAGACCCTCCACACCATCAGTGACAAGTGCGGTGACCCGTTCATCGTGGAGCGCAACCCGCATATCCATGACCCGGATGATGTTTTCCCTGGACTCGTCATCAAGATCACTCCTAATTCCAAACACTCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

100

Amino Acids

11.03

Weight (kDa)

4.95

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 124, 198, 227
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 108, 241
AhdI GACNNNNNGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 3 cut(s) 14, 44, 75
AluI AGCT 3 cut(s) 14, 44, 75
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 2 cut(s) 29, 222
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 179, 212
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 242, 258
BmeRI GACNNNNNGTC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 242, 258
BpmI CTGGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 106, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 241
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 106, 256
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 108, 241
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 108, 241
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 3 cut(s) 124, 198, 227
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 106, 256
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 117, 134
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 2 cut(s) 29, 222
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 11, 226
BstNI CCWGG 1 cut(s) 258
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 240, 256
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 29, 222
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 18, 236
CviJI RGCY 5 cut(s) 5, 14, 44, 59, 75
CviKI_1 RGCY 5 cut(s) 5, 14, 44, 59, 75
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DriI GACNNNNNGTC 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 75
EcoO65I GGTNACC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 2 cut(s) 21, 239
FaiI YATR 5 cut(s) 19, 65, 153, 231, 237
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 17, 235
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 41
GlaI GCGC 2 cut(s) 28, 221
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 280
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 29, 222
Hin1II CATG 2 cut(s) 21, 239
Hin6I GCGC 2 cut(s) 27, 220
HinP1I GCGC 2 cut(s) 27, 220
HinfI GANTC 2 cut(s) 98, 261
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 179, 212
Hpy188I TCNGA 2 cut(s) 107, 161
Hpy188III TCNNGA 1 cut(s) 271
Hpy99I CGWCG 2 cut(s) 146, 161
HpyAV CCTTC 2 cut(s) 62, 158
HpyCH4III ACNGT 2 cut(s) 117, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 226
Hsp92II CATG 2 cut(s) 21, 239
HspAI GCGC 2 cut(s) 27, 220
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 41, 151, 243, 255, 270
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 188, 200
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 3 cut(s) 33, 79, 283
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 101, 185
MroXI GAANNNNTTC 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 242, 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 11, 226
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 21, 239
NmuCI GTSAC 2 cut(s) 188, 200
PcsI WCGNNNNNNNCGW 2 cut(s) 83, 99
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 256
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 256
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 77
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 242, 258
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 16, 46, 77, 169
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 3 cut(s) 33, 79, 283
SsiI CCGC 3 cut(s) 124, 198, 227
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 240, 256
TaaI ACNGT 2 cut(s) 117, 134
TaqI TCGA 1 cut(s) 77
TasI AATT 3 cut(s) 33, 79, 283
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 2 cut(s) 188, 200
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 188, 200
TspDTI ATGAA 2 cut(s) 6, 199
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.