Prupe.2G288600_v2.0.a1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015879
Physical Location & Seq
Reverse (-)
28353583 .. 28354443
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G288600.1

Sequence Viewer

Length: 306 bp
ATGGCATCAAAGCCTATGGCTGATGCAGCCTCTTGGTACTGCGCCACAATCCTATTGGCCTTGATCTTGTTTGCTTCCATCAGAGAGAACGATTCTATGCCGGACAACGACCCGGTTCGAGGGGCTAAACACTTTGTGATCAACCGGCCCTGTGATGAAATTTATGTGGTCGGAGAAGGCGAGACCCTCCACACCATCAGTGACAAGTGCAGCGACCCCTTTATCGTGGAGCGCAACCCGCATATCCATGACCCGGATGATGTTTTCCCTGGCCTCGTCATCAAGATCACTCCTTCCAGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

102

Amino Acids

11.2

Weight (kDa)

4.95

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 119, 253
AjnI CCWGG 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 176
AoxI GGCC 3 cut(s) 57, 146, 271
ApeKI GCWGC 2 cut(s) 26, 210
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 2 cut(s) 44, 234
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 113, 254
BbvI GCAGC 2 cut(s) 38, 222
BccI CCATC 2 cut(s) 86, 203
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 113, 254
BcoDI GTCTC 1 cut(s) 176
BisI GCNGC 2 cut(s) 27, 211
BlsI GCNGC 2 cut(s) 28, 212
Bme1390I CCNGG 3 cut(s) 113, 254, 270
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 3 cut(s) 113, 254, 270
BmsI GCATC 2 cut(s) 13, 14
BpuMI CCSGG 2 cut(s) 113, 254
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 253
Bse118I RCCGGY 1 cut(s) 144
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 119, 253
BseXI GCAGC 2 cut(s) 38, 222
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 3 cut(s) 59, 148, 273
BsiSI CCGG 4 cut(s) 101, 113, 145, 254
BslI CCNNNNNNNGG 2 cut(s) 119, 253
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 3 cut(s) 59, 148, 273
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 63, 138, 285
BspACI CCGC 1 cut(s) 239
BspANI GGCC 3 cut(s) 59, 148, 273
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 3 cut(s) 63, 138, 285
Bst2UI CCWGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 262
BstHHI GCGC 2 cut(s) 44, 234
BstKTI GATC 3 cut(s) 66, 141, 288
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 63, 138, 285
BstMWI GCNNNNNNNGC 2 cut(s) 26, 238
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 3 cut(s) 111, 252, 268
BstV1I GCAGC 2 cut(s) 38, 222
BsuRI GGCC 3 cut(s) 59, 148, 273
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 205
CfoI GCGC 2 cut(s) 44, 234
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 248
CviJI RGCY 7 cut(s) 13, 20, 29, 59, 125, 148, 273
CviKI_1 RGCY 7 cut(s) 13, 20, 29, 59, 125, 148, 273
CviQI GTAC 1 cut(s) 37
DpnI GATC 3 cut(s) 65, 140, 287
DpnII GATC 3 cut(s) 63, 138, 285
DraIII CACNNNGTG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 251
FaiI YATR 5 cut(s) 17, 98, 165, 243, 249
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 246
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 27, 211
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 27, 211
GlaI GCGC 2 cut(s) 43, 233
GluI GCNGC 2 cut(s) 27, 211
HaeIII GGCC 3 cut(s) 59, 148, 273
HapII CCGG 4 cut(s) 101, 113, 145, 254
HhaI GCGC 2 cut(s) 44, 234
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 2 cut(s) 42, 232
HinP1I GCGC 2 cut(s) 42, 232
HinfI GANTC 1 cut(s) 92
HpaII CCGG 4 cut(s) 101, 113, 145, 254
Hpy188I TCNGA 2 cut(s) 83, 173
Hpy188III TCNNGA 2 cut(s) 283, 297
HpyAV CCTTC 2 cut(s) 170, 303
HpyCH4V TGCA 2 cut(s) 26, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 238
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 2 cut(s) 42, 232
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 63, 138, 285
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 7 cut(s) 114, 126, 158, 163, 255, 267, 282
Lsp1109I GCAGC 2 cut(s) 38, 222
LweI GCATC 2 cut(s) 13, 14
MaeIII GTNAC 1 cut(s) 200
MalI GATC 3 cut(s) 65, 140, 287
MboI GATC 3 cut(s) 63, 138, 285
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 40, 113, 197, 284
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 4 cut(s) 101, 113, 145, 254
MspR9I CCNGG 3 cut(s) 113, 254, 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 26, 238
NciI CCSGG 2 cut(s) 113, 254
NdeII GATC 3 cut(s) 63, 138, 285
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 28, 212
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 2 cut(s) 27, 211
Sau3AI GATC 3 cut(s) 63, 138, 285
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 113, 254, 270
SetI ASST 1 cut(s) 304
SfaNI GCATC 2 cut(s) 13, 14
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 111, 252, 268
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 26, 210
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.