pycom01g20490

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015879
Physical Location & Seq
Reverse (-)
18895313 .. 18895636
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20490.1

Sequence Viewer

Length: 324 bp
ATGGCACCAGAAGAAGCGGCAGACGCAGCCTCATGGTACTGCGCCACAGCCCTATTAGCCTTGATCTTGTTTGCTTCCATCAGAGAGAACAACTCTACGCCGGACAACAACAACTCGGTTCGAGGGAAACACTTCAATTACTTCATGATCAACCGGCCGTGTGATGAAATTTATGTCGTCGGAGAAGGTGAAACCCTCCACACCATCAGTGACAAGTGCGACGACCCGTATATCGTGGAGCGGAACCCTCATATCCATGACCCGGATGATGTTTTCCCTGGACTAGTCATCAAGATCACTCCTACCAAACGATCAGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

4.85

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 241
AciI CCGC 2 cut(s) 17, 241
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 283
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 26, 317
ApoI RAATTY 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 38, 304
BccI CCATC 2 cut(s) 86, 212
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 18, 27, 318
BlsI GCNGC 3 cut(s) 19, 28, 319
Bme1390I CCNGG 2 cut(s) 263, 279
BmiI GGNNCC 2 cut(s) 6, 245
BmrFI CCNGG 2 cut(s) 263, 279
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 153
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 262
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 38, 304
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 158
BsiSI CCGG 3 cut(s) 101, 154, 263
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 4 cut(s) 63, 147, 294, 311
BspACI CCGC 2 cut(s) 17, 241
BspANI GGCC 1 cut(s) 157
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 6, 245
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 4 cut(s) 63, 147, 294, 311
Bst2UI CCWGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 66, 150, 297, 314
BstMBI GATC 4 cut(s) 63, 147, 294, 311
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 3 cut(s) 23, 26, 56
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 261, 277
BstV1I GCAGC 2 cut(s) 38, 304
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 144
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 153
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 33, 145, 257
CviJI RGCY 5 cut(s) 29, 50, 59, 157, 317
CviKI_1 RGCY 5 cut(s) 29, 50, 59, 157, 317
CviQI GTAC 1 cut(s) 37
DpnI GATC 4 cut(s) 65, 149, 296, 313
DpnII GATC 4 cut(s) 63, 147, 294, 311
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 3 cut(s) 36, 148, 260
FaiI YATR 7 cut(s) 34, 146, 174, 231, 252, 258, 322
FatI CATG 3 cut(s) 32, 144, 256
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 18, 27, 318
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 18, 27, 318
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 18, 27, 318
HaeIII GGCC 1 cut(s) 157
HapII CCGG 3 cut(s) 101, 154, 263
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 36, 148, 260
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HpaII CCGG 3 cut(s) 101, 154, 263
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 83, 182
Hpy188III TCNNGA 2 cut(s) 145, 292
Hpy99I CGWCG 2 cut(s) 182, 224
HpyAV CCTTC 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 26, 56
Hsp92II CATG 3 cut(s) 36, 148, 260
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 4 cut(s) 63, 147, 294, 311
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 21, 114, 167, 264, 276, 291
Lsp1109I GCAGC 2 cut(s) 38, 304
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 209
MalI GATC 4 cut(s) 65, 149, 296, 313
MbiI CCGCTC 1 cut(s) 241
MboI GATC 4 cut(s) 63, 147, 294, 311
MboII GAAGA 1 cut(s) 23
MluCI AATT 2 cut(s) 136, 168
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 4 cut(s) 40, 116, 206, 258
MroXI GAANNNNTTC 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 3 cut(s) 101, 154, 263
MspR9I CCNGG 2 cut(s) 263, 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 23, 26, 56
NciI CCSGG 1 cut(s) 263
NdeII GATC 4 cut(s) 63, 147, 294, 311
NlaIII CATG 3 cut(s) 36, 148, 260
NlaIV GGNNCC 2 cut(s) 6, 245
NmuCI GTSAC 1 cut(s) 209
PagI TCATGA 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 19, 28, 319
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 6, 245
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 255
SatI GCNGC 3 cut(s) 18, 27, 318
Sau3AI GATC 4 cut(s) 63, 147, 294, 311
ScrFI CCNGG 2 cut(s) 263, 279
SetI ASST 2 cut(s) 190, 319
SmiMI CAYNNNNRTG 1 cut(s) 255
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 2 cut(s) 136, 168
SsiI CCGC 2 cut(s) 17, 241
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 261, 277
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 136, 168
TauI GCSGC 1 cut(s) 20
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 2 cut(s) 26, 317
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 133, 180
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.