MD01G1194400.v1.1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015879
Physical Location & Seq
Reverse (-)
29321596 .. 29321916
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1194400.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCACCAGAAGAAGCGGCAGACGCAGCCTCATGGTACTGCGCCACAGCCCTATTAGCCTTGATCTTGTTTGCTTCCATCAGAGAGAACAACTCTACGCCGGACAACAACTCGGTTCGAGGGAAACACTTCAATGACTTCATGATCAACCGGCCGTGTGATGAAATTTATGTCGTCGGAGAAGGTGAAACCCTCCACACCATCAGTGACAAGTGCGACGACCCGTATATCGTGGAGCGGAACCCTCATATCCATGATCCGGATGATGTTTTCCCTGGACTAGTCATCAAGATCACTCCTACCAAACGATCAGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

4.73

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 2 cut(s) 17, 238
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 280
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 26, 314
ApoI RAATTY 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 38, 301
BccI CCATC 2 cut(s) 86, 209
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BisI GCNGC 3 cut(s) 18, 27, 315
BlsI GCNGC 3 cut(s) 19, 28, 316
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 6, 242
BmrFI CCNGG 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 38, 301
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 101, 151, 260
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 5 cut(s) 63, 144, 256, 291, 308
BspACI CCGC 2 cut(s) 17, 238
BspANI GGCC 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 259
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 6, 242
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 5 cut(s) 63, 144, 256, 291, 308
Bst2UI CCWGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 5 cut(s) 66, 147, 259, 294, 311
BstMBI GATC 5 cut(s) 63, 144, 256, 291, 308
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 3 cut(s) 23, 26, 56
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 38, 301
BstZI CGGCCG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 150
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 33, 142, 254
CviJI RGCY 5 cut(s) 29, 50, 59, 154, 314
CviKI_1 RGCY 5 cut(s) 29, 50, 59, 154, 314
CviQI GTAC 1 cut(s) 37
DpnI GATC 5 cut(s) 65, 146, 258, 293, 310
DpnII GATC 5 cut(s) 63, 144, 256, 291, 308
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
EclXI CGGCCG 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 36, 145, 257
FaiI YATR 7 cut(s) 34, 143, 171, 228, 249, 255, 319
FatI CATG 3 cut(s) 32, 141, 253
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 18, 27, 315
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 18, 27, 315
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 18, 27, 315
HaeIII GGCC 1 cut(s) 154
HapII CCGG 3 cut(s) 101, 151, 260
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 36, 145, 257
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HpaII CCGG 3 cut(s) 101, 151, 260
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 83, 179
Hpy188III TCNNGA 3 cut(s) 142, 260, 289
Hpy99I CGWCG 2 cut(s) 179, 221
HpyAV CCTTC 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 26, 56
Hsp92II CATG 3 cut(s) 36, 145, 257
HspAI GCGC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 63, 144, 256, 291, 308
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 21, 114, 164, 261, 273, 288
Lsp1109I GCAGC 2 cut(s) 38, 301
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 206
MalI GATC 5 cut(s) 65, 146, 258, 293, 310
MbiI CCGCTC 1 cut(s) 238
MboI GATC 5 cut(s) 63, 144, 256, 291, 308
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 40, 113, 203, 255
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 132, 252
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 3 cut(s) 101, 151, 260
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 23, 26, 56
NdeII GATC 5 cut(s) 63, 144, 256, 291, 308
NlaIII CATG 3 cut(s) 36, 145, 257
NlaIV GGNNCC 2 cut(s) 6, 242
NmuCI GTSAC 1 cut(s) 206
PagI TCATGA 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 19, 28, 316
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 6, 242
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 132, 252
SatI GCNGC 3 cut(s) 18, 27, 315
Sau3AI GATC 5 cut(s) 63, 144, 256, 291, 308
ScrFI CCNGG 1 cut(s) 276
SetI ASST 2 cut(s) 187, 316
SmiMI CAYNNNNRTG 2 cut(s) 132, 252
SpeI ACTAGT 1 cut(s) 280
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 17, 238
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 118
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 20
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 26, 314
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 130, 177
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.