Rh1CG385900

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015879
Physical Location & Seq
Reverse (-)
65626469 .. 65627436
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG385900.1

Sequence Viewer

Length: 333 bp
ATGGCTCTGAAAACCATAAAAGCTTCATCCATGGCGGACGCAGCTTCATGGTACTGCGCTACAATTCTACTAGCCCTAATCCTTCTGGCTTCTATAAGAGAGAGCTCGAATTCCACGACAGACGATGATTCCGTCCGAGGGAAACAGTTCTTGCAGACGAACCGTCCCTGCGAAGAAATCTATGTCGTCGGAGAAGGTGAGACCCTCCACACCATCAGTGACAAGTGCGGTGACCCGTTCATCGTGGAGAGCAACCCGCATATCCATGACCCGGATGATGTTTTCCCCGGACTCGTCATCAAGATCACTCCTAATTCCAAACACTCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

4.98

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 228, 257
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 138, 271
AhdI GACNNNNNGTC 1 cut(s) 162
AluBI AGCT 3 cut(s) 23, 44, 105
AluI AGCT 3 cut(s) 23, 44, 105
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 272, 288
AsuHPI GGTGA 2 cut(s) 209, 242
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 221
BcnI CCSGG 2 cut(s) 272, 288
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 272, 288
BmeRI GACNNNNNGTC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 272, 288
BpuMI CCSGG 2 cut(s) 272, 288
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 30, 136, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 271
BseDI CCNNGG 3 cut(s) 30, 136, 286
BseGI GGATG 2 cut(s) 26, 280
BseLI CCNNNNNNNGG 2 cut(s) 138, 271
BseXI GCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 272, 288
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 138, 271
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 3 cut(s) 35, 228, 257
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 30, 136, 286
BssMI GATC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 147, 164
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 2 cut(s) 26, 280
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 270, 286
BstV1I GCAGC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 26, 280
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 59
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 31, 48, 266
CviJI RGCY 6 cut(s) 5, 23, 44, 74, 89, 105
CviKI_1 RGCY 6 cut(s) 5, 23, 44, 74, 89, 105
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DriI GACNNNNNGTC 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 105
Eco91I GGTNACC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 34, 51, 269
FaiI YATR 7 cut(s) 17, 32, 49, 95, 183, 261, 267
FaqI GGGAC 1 cut(s) 150
FatI CATG 3 cut(s) 30, 47, 265
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 13, 287
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 42
HapII CCGG 2 cut(s) 272, 288
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 34, 51, 269
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 128, 291
HpaII CCGG 2 cut(s) 272, 288
HphI GGTGA 2 cut(s) 209, 242
Hpy188I TCNGA 3 cut(s) 9, 137, 191
Hpy188III TCNNGA 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 92, 188
HpyCH4III ACNGT 2 cut(s) 147, 164
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 34, 51, 269
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 303
LpnPI CCDG 4 cut(s) 71, 181, 285, 301
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 218, 230
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 4 cut(s) 63, 109, 313, 328
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 2 cut(s) 131, 215
MroXI GAANNNNTTC 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 2 cut(s) 272, 288
MspR9I CCNGG 2 cut(s) 272, 288
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 272, 288
NcoI CCATGG 1 cut(s) 30
NdeII GATC 1 cut(s) 303
NlaIII CATG 3 cut(s) 34, 51, 269
NmuCI GTSAC 2 cut(s) 218, 230
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 129
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 230
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 107
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 272, 288
SduI GDGCHC 1 cut(s) 107
SetI ASST 4 cut(s) 25, 46, 107, 199
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 4 cut(s) 63, 109, 313, 328
SsiI CCGC 3 cut(s) 35, 228, 257
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 270, 286
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 147, 164
TaqI TCGA 1 cut(s) 107
TasI AATT 4 cut(s) 63, 109, 313, 328
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 218, 230
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 218, 230
TspDTI ATGAA 3 cut(s) 15, 36, 229
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.