Rorug01G0396300

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015879
Physical Location & Seq
Reverse (-)
50582985 .. 50589170
6186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0396300.1

Sequence Viewer

Length: 2619 bp
ATGGCGCGCTCAGCTCCGATTCTCAACCGCGACACCTCGCACTTGCTCTTCACCTTCAAACCTCCCCACTCTCCCTTCCACTCTCTCACTTCTCTCCGCCTCACCAAGCCTACTCTCCTCCCTACTTTTCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCTGGTTCTTGTGTCACGCGCGTCACCACCGTCCCGGTAGAGTACGCGCCGCCGGCTCCCGAATTCGAGTTCCACAGCGAGCTCGCGCGCCTCAAGTCTCTCCGCTCCCGCCTCGCCGGCGCAAAATCGCTACGCGCCAAAACCAGAGTGATCGACGGAGATTCCAGAGTGAAAAGATTCTTCAATTCCGGCAACAGCCGAGTCTTCTCTGCGGTTTTGGCCTCGCTGGATTTGAGTCCGACCGAGTTGTTCTTGTTCAAGTGCCTCGTCGCCGCCGGCCAAGAGCACGTGCTCGGCTGGGGGTTTGAGTTCGCCGAGAGCGAGGCGGAGCCGGCCAGGAGCCCCGTGAAGACCGCGTTTTACGCCATTGCTGAAATGATTGAGAAATTGGATGTGAACAGTGACGGTTCGGGGAAGAAGAAGGTTCGGTTTGCTTTGAATGATGAAGATTTTGAGGACTTGAAGAAGCTACTGAAGAATTTGGGAGAGGTTGAACAGTTCTATAACTGCATTGGAGGAGTGATTGGATATCAGATAACAGTAATGGAGCTTCTAGCGCAATCGAGAGCTGAAATGCAGACTACAAATTGGTATAACAACATACAAGAGCAGATGGAATGCCAGTTTTTGGAAATTCATGCACCTAGTGGACTTGATCTTTCTGAAAATGCAGAATATGCAGCTCAAGCTGCTCTATGGGGAATTCAGGGTTTGCCAGACCTAGGTGAAATTTATCCTCTGGGAGGCTCCGCCGACAGGCTTGGTTTGGTTGATCCTGATACAGGTGAATGTCTCCCAGCTGCAATGCTTCCTTATTGTGGGCGGACTTTATTGGAAGGTCTTATAAGAGATCTTCAGGCTAGAGAGTTTTTGTACTTCAAGATTTATGGGAAGCAGTGCATCACTCCTGTTGCTATCATGACAAGTGCTGCAAAGAACAACCATGAACACATAACTTCTCTTTGTGAAAAACTTGAATGGTTTAAGAGAGGTCGATCAAGTTTCCAACTTTTCGAACAGCCCCTTGTTCCAGCTGTTAGTGCAGAGGATGGGCAATGGATAATCAAGAAACCTTTTGCTCCCATTTGCAAGCCTGGTGGTCATGGTGTGATATGGAAACTTGCTTATGATAAAGGCATTTTTCAATGGTTTTATGATCATGGACGTAAAGGTGCAACTGTACGGCAAGTTAGCAATGTTGTGGCCGCTACAGATTTGACTCTCTTGGCACTAGCAGGGATTGGTTTACACCATGGGAAGAAACTGGGGTTTGCTTCCTGTAAGAGGAACTCGGGGGCTACAGAAGGAATTAATGTTCTAATGGAGAAGAAAAATCTGGATGGAAGGTGGGCATATGGTTTGTCTTGCATTGAATACACAGAGTTTGATAAATTTGGGATAGCAGATGGACCTCATTCTCGTAATAGTTTGCAGGCAGAGTTCCCTGCCAATACAAACATTTTGTATGTAGACTTACCTTCCGCGGAGTTGGTGGGTTCCAGTAAGAATACAGACAGCTTACCTGGCATGGTGTTAAATGTTAAAAAGGCGATATCATTTGTAGACAATTTTGGAAATCCACACAGTGTTCCTGGTGGCAGGCTTGAATGCACAATGCAAAATATTGCCGACAATTTTCTTAATACACATCCATCTAGAGATTATAAAGGCATTGAAGATAAGCTTGATACCTTTATTGTTTTTAATAAAAGAAGACGGGTTACATCATCTACTAAGAGGAAAAGAAGGCATGCAGACAAATCTTTACACCAAACTCCGGATGGTTCGCTGTTGGATATCCTAAGAAATGCTCATGACCTTCTGTCTCAGTGTGATATTCAACTTCCTGAGATTGGAGGTAATGACAAGTATCTAAATTCTGGACCACCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCCCTTTGGGAGGTCACCAGACAAAAGTTCTATGGAGGCTCAATAAGCAAAGGCTCTGAGTTACAAGTAGAGGTCGCAGAGTTCCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATCATAGAGGCTGATAATATTATGGGCTCAAGTAGGGTTGGTGAAGATGGTGAACCTATTTTACAATATGGACACAGGTGTGGAAGGTGTAAATTACAGAATGTAAGAGTATTGAATGAGGGAATTGACTGGAATTTTGAAGACAATGTCTATTGGAAGCATGTTGTGCAGCGCATCCAAGCATGTAAGGTTGTACTGCATGGAAATGCTGAGTTTGAGGCAACTGATGTTATCCTAAAGGGAAATCATGTATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACGCCAGGAGATTCAGGTTTAGCAATCGGATTAGATCCTATCGCAGAGAATATGATGGACAGTGGAAGCTGGTATTGGAAGTACGGGATCAAGGGCACAAATATTCAGTTGGAATTGGTAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

872

Amino Acids

96.67

Weight (kDa)

6.47

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hexapep_UGP3_C PF25441 706 - 869 1.4e-75 UGP3-like, C-terminal hexapeptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25433 AT5G62150
malus_domestica MD00G1005300.v1.1 MD01G1194400.v1.1
prunus_persica Prupe.2G288600_v2.0.a1
pyrus_communis pycom01g20490 pycom07g24050
rosa_chinensis RchiOBHm_Chr1g0376531
rosa_multiflora Rmu_sc0016049.1_g000003
rosa_roxburghii Rroxscaffold_4G00282030
rosa_rugosa Rorug01G0396300
rosa_samantha Rh1AG407800 Rh1BG372100 Rh1CG385900 Rh1DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1013, 1833
AccB7I CCANNNNNTGG 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 273
AccI GTMKAC 2 cut(s) 1638, 1731
AccIII TCCGGA 1 cut(s) 1945
AclWI GGATC 3 cut(s) 935, 2519, 2585
AcoI YGGCCR 3 cut(s) 445, 501, 1371
AcsI RAATTY 8 cut(s) 230, 646, 801, 870, 897, 1559, 2044, 2338
AcuI CTGAAG 2 cut(s) 662, 1007
AcvI CACGTG 1 cut(s) 457
AdeI CACNNNGTG 2 cut(s) 815, 1754
AfaI GTAC 5 cut(s) 212, 1043, 1350, 2400, 2573
AhdI GACNNNNNGTC 1 cut(s) 1990
AjnI CCWGG 6 cut(s) 169, 503, 1261, 1690, 1759, 2494
AjuI GAANNNNNNNTTGG 2 cut(s) 2548, 2580
AleI CACNNNNGTG 1 cut(s) 2283
AloI GAACNNNNNNTCC 2 cut(s) 1467, 1499
Alw21I GWGCWC 3 cut(s) 252, 456, 462
Alw26I GTCTC 3 cut(s) 270, 965, 1998
AlwI GGATC 3 cut(s) 935, 2519, 2585
Ama87I CYCGRG 1 cut(s) 1459
Aor13HI TCCGGA 1 cut(s) 1945
AoxI GGCC 5 cut(s) 387, 445, 501, 1371, 2086
ApeKI GCWGC 5 cut(s) 848, 857, 968, 1097, 2374
ApoI RAATTY 8 cut(s) 230, 646, 801, 870, 897, 1559, 2044, 2338
ArsI GACNNNNNNTTYG 2 cut(s) 2324, 2356
AseI ATTAAT 1 cut(s) 1479
Asp700I GAANNNNTTC 1 cut(s) 344
AspA2I CCTAGG 1 cut(s) 889
AspS9I GGNCC 3 cut(s) 1577, 2051, 2087
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 8 cut(s) 43, 94, 184, 905, 965, 2095, 2258, 2267
AsuII TTCGAA 1 cut(s) 1182
AvaI CYCGRG 1 cut(s) 1459
AvaII GGWCC 2 cut(s) 1577, 2051
AvrII CCTAGG 1 cut(s) 889
BaeGI GKGCMC 1 cut(s) 2588
BanII GRGCYC 3 cut(s) 252, 512, 2234
BarI GAAGNNNNNNTAC 4 cut(s) 702, 734, 1873, 1905
BbrPI CACGTG 1 cut(s) 457
BbsI GAAGAC 4 cut(s) 364, 524, 1888, 2352
Bbv12I GWGCWC 3 cut(s) 252, 456, 462
BbvI GCAGC 5 cut(s) 844, 860, 955, 1084, 2386
BccI CCATC 9 cut(s) 775, 1211, 1502, 1568, 1828, 1943, 2189, 2246, 2539
BceAI ACGGC 1 cut(s) 1367
BciT130I CCWGG 6 cut(s) 171, 505, 1263, 1692, 1761, 2496
BclI TGATCA 2 cut(s) 1324, 2205
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 270, 965, 1998
BfaI CTAG 6 cut(s) 722, 813, 890, 1029, 1400, 1824
BfmI CTRYAG 2 cut(s) 1377, 1467
BglI GCCNNNNNGGC 1 cut(s) 285
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 8 cut(s) 218, 441, 849, 858, 969, 1098, 1374, 2375
BlnI CCTAGG 1 cut(s) 889
BlpI GCTNAGC 1 cut(s) 10
BlsI GCNGC 8 cut(s) 219, 442, 850, 859, 970, 1099, 1375, 2376
Bme1390I CCNGG 7 cut(s) 171, 203, 505, 1263, 1692, 1761, 2496
Bme18I GGWCC 2 cut(s) 1577, 2051
BmeRI GACNNNNNGTC 1 cut(s) 1990
BmeT110I CYCGRG 1 cut(s) 1459
BmgT120I GGNCC 3 cut(s) 1577, 2051, 2087
BmiI GGNNCC 6 cut(s) 225, 498, 509, 916, 1666, 2089
BmrFI CCNGG 7 cut(s) 171, 203, 505, 1263, 1692, 1761, 2496
BmrI ACTGGG 1 cut(s) 1442
BmsI GCATC 2 cut(s) 1077, 2388
BmuI ACTGGG 1 cut(s) 1442
BpiI GAAGAC 4 cut(s) 364, 524, 1888, 2352
Bpu1102I GCTNAGC 1 cut(s) 10
Bpu14I TTCGAA 1 cut(s) 1182
BpuEI CTTGAG 3 cut(s) 245, 837, 2218
BpuMI CCSGG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 889, 1420, 1650
BsaWI WCCGGW 1 cut(s) 1945
Bse118I RCCGGY 4 cut(s) 220, 284, 443, 499
Bse1I ACTGG 4 cut(s) 790, 1437, 1668, 2339
Bse3DI GCAATG 4 cut(s) 534, 978, 1229, 1369
BseAI TCCGGA 1 cut(s) 1945
BseBI CCWGG 6 cut(s) 171, 505, 1263, 1692, 1761, 2496
BseDI CCNNGG 3 cut(s) 889, 1420, 1650
BseGI GGATG 6 cut(s) 565, 1222, 1513, 1816, 1954, 2379
BseMI GCAATG 4 cut(s) 534, 978, 1229, 1369
BseMII CTCAG 5 cut(s) 24, 2007, 2009, 2136, 2406
BseNI ACTGG 4 cut(s) 790, 1437, 1668, 2339
BsePI GCGCGC 2 cut(s) 5, 254
BseRI GAGGAG 2 cut(s) 107, 699
BseSI GKGCMC 1 cut(s) 2588
BseXI GCAGC 5 cut(s) 844, 860, 955, 1084, 2386
BseYI CCCAGC 2 cut(s) 465, 964
BsgI GTGCAG 3 cut(s) 1230, 2057, 2393
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 5 cut(s) 389, 447, 503, 1373, 2088
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 3 cut(s) 252, 456, 462
BsiHKCI CYCGRG 1 cut(s) 1459
BsiSI CCGG 7 cut(s) 203, 221, 285, 357, 444, 500, 1946
BslFI GGGAC 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 270, 965, 1998
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 2 cut(s) 791, 1781
BsnI GGCC 5 cut(s) 389, 447, 503, 1373, 2088
BsoBI CYCGRG 1 cut(s) 1459
Bsp119I TTCGAA 1 cut(s) 1182
Bsp1286I GDGCHC 6 cut(s) 252, 456, 462, 512, 2234, 2588
Bsp13I TCCGGA 1 cut(s) 1945
Bsp1720I GCTNAGC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 1420
BspANI GGCC 5 cut(s) 389, 447, 503, 1373, 2088
BspCNI CTCAG 5 cut(s) 23, 2008, 2008, 2137, 2407
BspEI TCCGGA 1 cut(s) 1945
BspHI TCATGA 2 cut(s) 1086, 1981
BspLI GGNNCC 6 cut(s) 225, 498, 509, 916, 1666, 2089
BspPI GGATC 3 cut(s) 935, 2519, 2585
BspQI GCTCTTC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 1182
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 4 cut(s) 534, 978, 1229, 1369
BsrFI RCCGGY 4 cut(s) 220, 284, 443, 499
BsrI ACTGG 4 cut(s) 790, 1437, 1668, 2339
BssAI RCCGGY 4 cut(s) 220, 284, 443, 499
BssECI CCNNGG 3 cut(s) 889, 1420, 1650
BssHII GCGCGC 2 cut(s) 5, 254
BssT1I CCWWGG 2 cut(s) 889, 1420
Bst2UI CCWGG 6 cut(s) 171, 505, 1263, 1692, 1761, 2496
Bst4CI ACNGT 8 cut(s) 199, 569, 575, 666, 709, 1348, 1754, 2552
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 2 cut(s) 845, 2371
BstBAI YACGTR 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 1182
BstDEI CTNAG 7 cut(s) 10, 1902, 1970, 1995, 2016, 2145, 2415
BstDSI CCRYGG 2 cut(s) 1420, 1650
BstEII GGTNACC 1 cut(s) 2101
BstENI CCTNNNNNAGG 4 cut(s) 909, 948, 1450, 2096
BstF5I GGATG 6 cut(s) 565, 1222, 1513, 1816, 1954, 2379
BstMAI GTCTC 3 cut(s) 270, 965, 1998
BstMCI CGRYCG 1 cut(s) 411
BstNI CCWGG 6 cut(s) 171, 505, 1263, 1692, 1761, 2496
BstNSI RCATGY 3 cut(s) 1922, 2369, 2391
BstPI GGTNACC 1 cut(s) 2101
BstSCI CCNGG 7 cut(s) 169, 201, 503, 1261, 1690, 1759, 2494
BstSFI CTRYAG 2 cut(s) 1377, 1467
BstSLI GKGCMC 1 cut(s) 2588
BstV1I GCAGC 5 cut(s) 844, 860, 955, 1084, 2386
BstV2I GAAGAC 4 cut(s) 364, 524, 1888, 2352
BstX2I RGATCY 2 cut(s) 1018, 2524
BstYI RGATCY 2 cut(s) 1018, 2524
BsuRI GGCC 5 cut(s) 389, 447, 503, 1373, 2088
BtgI CCRYGG 2 cut(s) 1420, 1650
BtsCI GGATG 6 cut(s) 565, 1222, 1513, 1816, 1954, 2379
BtsI GCAGTG 1 cut(s) 1070
BtsIMutI CAGTG 5 cut(s) 574, 1070, 1759, 2003, 2557
CciI TCATGA 2 cut(s) 1086, 1981
Cfr10I RCCGGY 4 cut(s) 220, 284, 443, 499
Cfr13I GGNCC 3 cut(s) 1577, 2051, 2087
Cfr42I CCGCGG 1 cut(s) 1653
CseI GACGC 1 cut(s) 178
Csp6I GTAC 5 cut(s) 211, 1042, 1349, 2399, 2572
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviQI GTAC 5 cut(s) 211, 1042, 1349, 2399, 2572
DdeI CTNAG 7 cut(s) 10, 1902, 1970, 1995, 2016, 2145, 2415
DraIII CACNNNGTG 2 cut(s) 815, 1754
DriI GACNNNNNGTC 1 cut(s) 1990
EaeI YGGCCR 3 cut(s) 445, 501, 1371
Eam1104I CTCTTC 1 cut(s) 53
Eam1105I GACNNNNNGTC 1 cut(s) 1990
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 4 cut(s) 86, 509, 907, 1006
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 889, 1420
Eco24I GRGCYC 3 cut(s) 252, 512, 2234
Eco32I GATATC 3 cut(s) 698, 1722, 1966
Eco47I GGWCC 2 cut(s) 1577, 2051
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 662, 1007
Eco72I CACGTG 1 cut(s) 457
Eco88I CYCGRG 1 cut(s) 1459
Eco91I GGTNACC 1 cut(s) 2101
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 4 cut(s) 909, 948, 1450, 2096
EcoO65I GGTNACC 1 cut(s) 2101
EcoRI GAATTC 2 cut(s) 230, 870
EcoRII CCWGG 6 cut(s) 169, 503, 1261, 1690, 1759, 2494
EcoRV GATATC 3 cut(s) 698, 1722, 1966
EcoT14I CCWWGG 2 cut(s) 889, 1420
EcoT38I GRGCYC 3 cut(s) 252, 512, 2234
ErhI CCWWGG 2 cut(s) 889, 1420
FalI AAGNNNNNCTT 2 cut(s) 1836, 1868
FaqI GGGAC 1 cut(s) 185
FauI CCCGC 1 cut(s) 284
FauNDI CATATG 1 cut(s) 1522
FbaI TGATCA 2 cut(s) 1324, 2205
FblI GTMKAC 2 cut(s) 1638, 1731
Fnu4HI GCNGC 8 cut(s) 218, 441, 849, 858, 969, 1098, 1374, 2375
FokI GGATG 6 cut(s) 572, 1229, 1520, 1803, 1961, 2366
FriOI GRGCYC 3 cut(s) 252, 512, 2234
Fsp4HI GCNGC 8 cut(s) 218, 441, 849, 858, 969, 1098, 1374, 2375
FspBI CTAG 6 cut(s) 722, 813, 890, 1029, 1400, 1824
GluI GCNGC 8 cut(s) 218, 441, 849, 858, 969, 1098, 1374, 2375
GsaI CCCAGC 2 cut(s) 469, 968
HaeIII GGCC 5 cut(s) 389, 447, 503, 1373, 2088
HapII CCGG 7 cut(s) 203, 221, 285, 357, 444, 500, 1946
HgaI GACGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 1850
HinfI GANTC 7 cut(s) 19, 329, 345, 369, 403, 1387, 2501
HpaII CCGG 7 cut(s) 203, 221, 285, 357, 444, 500, 1946
HphI GGTGA 8 cut(s) 43, 94, 184, 905, 965, 2095, 2258, 2267
Hpy166II GTNNAC 6 cut(s) 565, 818, 1415, 1639, 1732, 2258
Hpy188I TCNGA 6 cut(s) 18, 408, 702, 832, 2146, 2519
Hpy8I GTNNAC 6 cut(s) 565, 818, 1415, 1639, 1732, 2258
Hpy99I CGWCG 2 cut(s) 326, 440
HpyCH4III ACNGT 8 cut(s) 199, 569, 575, 666, 709, 1348, 1754, 2552
HpyCH4IV ACGT 2 cut(s) 456, 1333
HpyF3I CTNAG 7 cut(s) 10, 1902, 1970, 1995, 2016, 2145, 2415
HpySE526I ACGT 2 cut(s) 456, 1333
Kpn2I TCCGGA 1 cut(s) 1945
KroI GCCGGC 4 cut(s) 220, 284, 443, 499
KroNI GCCGGC 4 cut(s) 222, 286, 445, 501
Ksp22I TGATCA 2 cut(s) 1324, 2205
KspI CCGCGG 1 cut(s) 1653
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 8 cut(s) 19, 229, 278, 496, 507, 715, 920, 1252
Lsp1109I GCAGC 5 cut(s) 844, 860, 955, 1084, 2386
LweI GCATC 2 cut(s) 1077, 2388
MaeI CTAG 6 cut(s) 722, 813, 890, 1029, 1400, 1824
MaeII ACGT 2 cut(s) 456, 1333
MaeIII GTNAC 6 cut(s) 181, 190, 569, 1888, 2101, 2148
MbiI CCGCTC 1 cut(s) 273
MflI RGATCY 2 cut(s) 1018, 2524
MhlI GDGCHC 6 cut(s) 252, 456, 462, 512, 2234, 2588
MlyI GAGTC 3 cut(s) 378, 412, 1381
MmeI TCCRAC 4 cut(s) 431, 1198, 1941, 2580
MreI CGCCGGCG 1 cut(s) 284
MroI TCCGGA 1 cut(s) 1945
MroNI GCCGGC 4 cut(s) 220, 284, 443, 499
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 6 cut(s) 1152, 1479, 1703, 1710, 1809, 1872
MslI CAYNNNNRTG 2 cut(s) 2283, 2409
MspA1I CMGCKG 3 cut(s) 968, 1202, 1652
MspI CCGG 7 cut(s) 203, 221, 285, 357, 444, 500, 1946
MspR9I CCNGG 7 cut(s) 171, 203, 505, 1263, 1692, 1761, 2496
Mva1269I GAATGC 2 cut(s) 791, 1781
MvaI CCWGG 6 cut(s) 171, 505, 1263, 1692, 1761, 2496
NaeI GCCGGC 4 cut(s) 222, 286, 445, 501
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 1420
NdeI CATATG 1 cut(s) 1522
NgoMIV GCCGGC 4 cut(s) 220, 284, 443, 499
NlaIV GGNNCC 6 cut(s) 225, 498, 509, 916, 1666, 2089
NmeAIII GCCGAG 3 cut(s) 392, 441, 508
NmuCI GTSAC 4 cut(s) 181, 190, 569, 2101
NspI RCATGY 3 cut(s) 1922, 2369, 2391
NspV TTCGAA 1 cut(s) 1182
OliI CACNNNNGTG 1 cut(s) 2283
PaeI GCATGC 1 cut(s) 1922
PagI TCATGA 2 cut(s) 1086, 1981
PauI GCGCGC 2 cut(s) 5, 254
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 2 cut(s) 791, 1781
PdiI GCCGGC 4 cut(s) 222, 286, 445, 501
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 4 cut(s) 19, 329, 345, 2501
PflFI GACNNNGTC 1 cut(s) 2351
PflMI CCANNNNNTGG 1 cut(s) 796
PkrI GCNGC 8 cut(s) 219, 442, 850, 859, 970, 1099, 1375, 2376
PleI GAGTC 3 cut(s) 377, 411, 1381
PmaCI CACGTG 1 cut(s) 457
PmlI CACGTG 1 cut(s) 457
PpsI GAGTC 3 cut(s) 377, 411, 1381
Ppu21I YACGTR 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 1479
PsiI TTATAA 2 cut(s) 1013, 1833
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 6 cut(s) 169, 503, 1261, 1690, 1759, 2494
PspCI CACGTG 1 cut(s) 457
PspEI GGTNACC 1 cut(s) 2101
PspFI CCCAGC 2 cut(s) 465, 964
PspGI CCWGG 6 cut(s) 169, 503, 1261, 1690, 1759, 2494
PspN4I GGNNCC 6 cut(s) 225, 498, 509, 916, 1666, 2089
PspPI GGNCC 3 cut(s) 1577, 2051, 2087
PsrI GAACNNNNNNTAC 4 cut(s) 2250, 2282, 2448, 2480
PsuI RGATCY 2 cut(s) 1018, 2524
PsyI GACNNNGTC 1 cut(s) 2351
PteI GCGCGC 2 cut(s) 5, 254
PvuII CAGCTG 2 cut(s) 968, 1202
RsaI GTAC 5 cut(s) 212, 1043, 1350, 2400, 2573
RsaNI GTAC 5 cut(s) 211, 1042, 1349, 2399, 2572
RseI CAYNNNNRTG 2 cut(s) 2283, 2409
SacI GAGCTC 1 cut(s) 252
SacII CCGCGG 1 cut(s) 1653
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 6 cut(s) 1152, 1479, 1703, 1710, 1809, 1872
SatI GCNGC 8 cut(s) 218, 441, 849, 858, 969, 1098, 1374, 2375
Sau96I GGNCC 3 cut(s) 1577, 2051, 2087
SchI GAGTC 3 cut(s) 378, 412, 1381
ScrFI CCNGG 7 cut(s) 171, 203, 505, 1263, 1692, 1761, 2496
SduI GDGCHC 6 cut(s) 252, 456, 462, 512, 2234, 2588
SfaNI GCATC 2 cut(s) 1077, 2388
SfcI CTRYAG 2 cut(s) 1377, 1467
Sfr303I CCGCGG 1 cut(s) 1653
SfuI TTCGAA 1 cut(s) 1182
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 1653
SinI GGWCC 2 cut(s) 1577, 2051
SmiMI CAYNNNNRTG 2 cut(s) 2283, 2409
SmlI CTYRAG 3 cut(s) 260, 852, 2233
SmoI CTYRAG 3 cut(s) 260, 852, 2233
SphI GCATGC 1 cut(s) 1922
SspI AATATT 3 cut(s) 1792, 2224, 2593
SspMI CTAG 6 cut(s) 722, 813, 890, 1029, 1400, 1824
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 7 cut(s) 169, 201, 503, 1261, 1690, 1759, 2494
StyI CCWWGG 2 cut(s) 889, 1420
TaaI ACNGT 8 cut(s) 199, 569, 575, 666, 709, 1348, 1754, 2552
TaiI ACGT 2 cut(s) 459, 1336
TaqI TCGA 5 cut(s) 234, 321, 731, 1162, 1182
TaqII GACCGA 1 cut(s) 425
TatI WGTACW 2 cut(s) 1041, 2398
TauI GCSGC 3 cut(s) 220, 443, 1376
TfiI GAWTC 4 cut(s) 19, 329, 345, 2501
Tru1I TTAA 6 cut(s) 1152, 1479, 1703, 1710, 1809, 1872
Tru9I TTAA 6 cut(s) 1152, 1479, 1703, 1710, 1809, 1872
TscAI CASTG 5 cut(s) 574, 1070, 1759, 2003, 2557
TseFI GTSAC 4 cut(s) 181, 190, 569, 2101
TseI GCWGC 5 cut(s) 848, 857, 968, 1097, 2374
Tsp45I GTSAC 4 cut(s) 181, 190, 569, 2101
TspDTI ATGAA 4 cut(s) 627, 794, 1128, 2498
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 5 cut(s) 574, 1070, 1759, 2003, 2557
Tth111I GACNNNGTC 1 cut(s) 2351
Van91I CCANNNNNTGG 1 cut(s) 796
VpaK11BI GGWCC 2 cut(s) 1577, 2051
VspI ATTAAT 1 cut(s) 1479
XagI CCTNNNNNAGG 4 cut(s) 909, 948, 1450, 2096
XapI RAATTY 8 cut(s) 230, 646, 801, 870, 897, 1559, 2044, 2338
XbaI TCTAGA 1 cut(s) 1823
XceI RCATGY 3 cut(s) 1922, 2369, 2391
XcmI CCANNNNNNNNNTGG 1 cut(s) 1946
XmaJI CCTAGG 1 cut(s) 889
XmiI GTMKAC 2 cut(s) 1638, 1731
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 6 cut(s) 722, 813, 890, 1029, 1400, 1824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.