MD00G1056900.v1.1

Encoded by

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
10582118 .. 10582387
270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1056900.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGATATCTCGCCACAACTTCTGCAATACCGATATCATTTTGTCATAGCAATCTTTGTTTCGCTAATATTTTCTTTAATGTTGTATGCAGCCCCTAGGATTCTAACCATTTTGGGTTACTTTTGGCCTCTCTTTGCCTCCACAACAATATTTTTGGTGGCAGTAATCGCCTTTGGTGGTGTTTCACAGCTGTCGACAGAATCACACGGTGAAGCACAAGGTCAAGGAATCATAGATTATGTTGCTGGGCAGCCAGACTACACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.88

Weight (kDa)

4.8

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16400
fragaria_vesca FvH4_3g00490
malus_domestica MD00G1056900.v1.1
prunus_persica Prupe.4G005500_v2.0.a1
pyrus_communis pycom05g32680
rosa_chinensis RchiOBHm_Chr5g0000661
rosa_multiflora Rmu_sc0011992.1_g000011
rosa_roxburghii Rroxscaffold_1G00075540
rosa_rugosa Rorug04G0385600
rosa_samantha Rh5AG005700 Rh5BG007300 Rh5CG006100 Rh5DG005900
rosa_wichuraiana Rw5G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 209
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 89, 250
AspA2I CCTAGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 95
BbvI GCAGC 2 cut(s) 101, 262
BfaI CTAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 90, 251
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 2 cut(s) 91, 252
BsaJI CCNNGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 101, 262
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 127
BsnI GGCC 1 cut(s) 127
BspANI GGCC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 101, 262
BsuRI GGCC 1 cut(s) 127
CviJI RGCY 4 cut(s) 92, 127, 190, 253
CviKI_1 RGCY 4 cut(s) 92, 127, 190, 253
DraIII CACNNNGTG 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 95
Eco32I GATATC 2 cut(s) 7, 35
EcoRV GATATC 2 cut(s) 7, 35
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 4 cut(s) 47, 87, 233, 240
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 90, 251
Fsp4HI GCNGC 2 cut(s) 90, 251
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 90, 251
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 3 cut(s) 100, 200, 228
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 25, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 101, 262
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 116
MluCI AATT 1 cut(s) 265
MnlI CCTC 2 cut(s) 138, 148
MseI TTAA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 100, 200, 228
PkrI GCNGC 2 cut(s) 91, 252
PspFI CCCAGC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 190
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 2 cut(s) 90, 251
SetI ASST 2 cut(s) 192, 223
SgeI CNNG 7 cut(s) 22, 108, 218, 230, 236, 258, 266
Sse9I AATT 1 cut(s) 265
SspI AATATT 2 cut(s) 69, 150
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 265
TfiI GAWTC 3 cut(s) 100, 200, 228
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 2 cut(s) 89, 250
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.