Rorug04G0385600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016551
Physical Location & Seq
Forward (+)
55560269 .. 55562893
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0385600.1

Sequence Viewer

Length: 1122 bp
ATGGGCGAACCTAACGAAGGGAGGAGGCGAGCAATGGAGAACCTGACGTTTCAGATGGATAAGTACCCGAGAGATCTGCTGCAGAGATTAATGTGCAGAAACGACGCGTCGCAGTCGAAATATGAGGAGGGAAATGAGGAGGAGCTGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTAGACAGGAGCGAGAAAAGCAAGCTAGTCCGATCTTCCTCGATTGCGGTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGGCGGCGAAGGCGGCTTCGTACGCGGGGCTGATGAGGGCGTCGTCGCTTCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGTTGGCGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAACAGCAGCAGCAGCAGCAGCAAGGAGGAAGAGGAAAGGCGTGAATTTGAGGTGGGACCCACTTCAGGGATGAGGGCGAATAATCCGGCGGTGGTGCAGCCGTTTTGGGCGGCGAGGCAAGCGGTTGGTGGTGGCGGTGGAGGAATGGATCCCTTGGCGAAGGGTAAAAATGACATTTTGGGTGGCTTTCAGGGGTTTGGGCTGCAGCCCAGTTCTCAGGGCTCGGTGGAGTCACAAGGTGGTGGAAGCTCGTCGGGGTTGTCAGAAATGGAGAGTAAACCTCTTCAAGGATCCAGCAGCTGTGGTGAAGCAAGAAGCCCTATTAGTAATCAGGATCCACGAAGCAATCAGGGCACCACCCTTCGTTCTTTGGGGTCATTGACGCCTGAGCATGCTGGATGCATTTCCAGGGCTGTCATGGAAAACATGTGTAAGAAGCCTAATCCTTCAGAAAATAAAGGAAGGGAAACTAGGACGAATGCCATGGAGGATATGCCTTGTGTTTTCACAAAAGGAGACGGTCCTAATGGGAGAAAAATAGAAGGAATCCTATACCGATATGGGAAGGGAGAGGAAGTAAGAATAATGTGTGTATGCCACGGCACCTTTCTTTCTCCGGCAGAGTTTGTGAAGCACGCAGGAGGTGGTGACGTCGCGCACCCGCTTCGGCACATAGTTGTAAACCCTGCTGCAACTGCCTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

40.6

Weight (kDa)

8.56

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 45 - 79 1.9e-15 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 101 - 137 1.7e-20 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 332 - 364 6.4e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16400
fragaria_vesca FvH4_3g00490
malus_domestica MD00G1056900.v1.1
prunus_persica Prupe.4G005500_v2.0.a1
pyrus_communis pycom05g32680
rosa_chinensis RchiOBHm_Chr5g0000661
rosa_multiflora Rmu_sc0011992.1_g000011
rosa_roxburghii Rroxscaffold_1G00075540
rosa_rugosa Rorug04G0385600
rosa_samantha Rh5AG005700 Rh5BG007300 Rh5CG006100 Rh5DG005900
rosa_wichuraiana Rw5G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1068
AccB1I GGYRCC 2 cut(s) 767, 1016
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 107, 296, 1070
AclWI GGATC 6 cut(s) 557, 570, 699, 712, 743, 756
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 462, 846
AcyI GRCGYC 3 cut(s) 311, 797, 1065
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 65, 293
AfiI CCNNNNNNNGG 4 cut(s) 17, 479, 480, 701
AflIII ACRYGT 2 cut(s) 105, 840
AgsI TTSAA 1 cut(s) 701
AjnI CCWGG 1 cut(s) 821
AluBI AGCT 5 cut(s) 145, 151, 211, 663, 714
AluI AGCT 5 cut(s) 145, 151, 211, 663, 714
Alw26I GTCTC 2 cut(s) 323, 924
AlwI GGATC 6 cut(s) 557, 570, 699, 712, 743, 756
AlwNI CAGNNNCTG 2 cut(s) 370, 714
Ama87I CYCGRG 1 cut(s) 67
ApoI RAATTY 1 cut(s) 458
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 2 cut(s) 470, 935
AsuHPI GGTGA 3 cut(s) 247, 731, 1073
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 470, 935
BaeGI GKGCMC 1 cut(s) 770
BamHI GGATCC 3 cut(s) 562, 704, 748
BanI GGYRCC 2 cut(s) 767, 1016
BanII GRGCYC 1 cut(s) 638
BccI CCATC 1 cut(s) 49
BceAI ACGGC 3 cut(s) 229, 499, 1030
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 1061, 1095
BciT130I CCWGG 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 323, 924
BfaI CTAG 2 cut(s) 212, 885
BfmI CTRYAG 2 cut(s) 80, 617
BglII AGATCT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 823
Bme18I GGWCC 2 cut(s) 470, 935
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 470, 935
BmiI GGNNCC 7 cut(s) 471, 472, 564, 706, 750, 769, 1018
BmrFI CCNGG 1 cut(s) 823
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 803
BmuI ACTGGG 1 cut(s) 618
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 801
BsaHI GRCGYC 3 cut(s) 311, 797, 1065
BsaJI CCNNGG 4 cut(s) 567, 822, 897, 1012
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 975, 1005
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 479, 480, 701
Bse1I ACTGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 4 cut(s) 567, 822, 897, 1012
BseGI GGATG 2 cut(s) 489, 818
BseLI CCNNNNNNNGG 4 cut(s) 17, 479, 480, 701
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 644, 792
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 7 cut(s) 37, 140, 152, 155, 350, 353, 409
BseSI GKGCMC 1 cut(s) 770
BsgI GTGCAG 2 cut(s) 115, 530
Bsh1236I CGCG 3 cut(s) 107, 296, 1070
BshNI GGYRCC 2 cut(s) 767, 1016
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 500, 1031
BsiWI CGTACG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 4 cut(s) 17, 479, 480, 701
BsmAI GTCTC 2 cut(s) 323, 924
BsmBI CGTCTC 2 cut(s) 323, 924
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 898
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 638, 770
Bsp143I GATC 5 cut(s) 73, 218, 562, 704, 748
Bsp19I CCATGG 1 cut(s) 897
BspCNI CTCAG 2 cut(s) 643, 793
BspFNI CGCG 3 cut(s) 107, 296, 1070
BspLI GGNNCC 7 cut(s) 471, 472, 564, 706, 750, 769, 1018
BspMAI CTGCAG 2 cut(s) 84, 621
BspPI GGATC 6 cut(s) 557, 570, 699, 712, 743, 756
BspT107I GGYRCC 2 cut(s) 767, 1016
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 4 cut(s) 567, 822, 897, 1012
BssMI GATC 5 cut(s) 73, 218, 562, 704, 748
BssNI GRCGYC 3 cut(s) 311, 797, 1065
BssT1I CCWWGG 2 cut(s) 567, 897
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 4 cut(s) 252, 344, 438, 702
BstACI GRCGYC 3 cut(s) 311, 797, 1065
BstAPI GCANNNNNTGC 1 cut(s) 370
BstC8I GCNNGC 5 cut(s) 30, 209, 534, 807, 1050
BstDEI CTNAG 2 cut(s) 630, 801
BstDSI CCRYGG 2 cut(s) 897, 1012
BstENI CCTNNNNNAGG 2 cut(s) 15, 699
BstF5I GGATG 2 cut(s) 489, 818
BstFNI CGCG 3 cut(s) 107, 296, 1070
BstHHI GCGC 1 cut(s) 1072
BstKTI GATC 5 cut(s) 76, 221, 565, 707, 751
BstMAI GTCTC 2 cut(s) 323, 924
BstMBI GATC 5 cut(s) 73, 218, 562, 704, 748
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 2 cut(s) 809, 844
BstSCI CCNGG 1 cut(s) 821
BstSFI CTRYAG 2 cut(s) 80, 617
BstSLI GKGCMC 1 cut(s) 770
BstUI CGCG 3 cut(s) 107, 296, 1070
BstX2I RGATCY 4 cut(s) 73, 562, 704, 748
BstYI RGATCY 4 cut(s) 73, 562, 704, 748
BtgI CCRYGG 2 cut(s) 897, 1012
BtsCI GGATG 2 cut(s) 489, 818
Cac8I GCNNGC 5 cut(s) 30, 209, 534, 807, 1050
CaiI CAGNNNCTG 2 cut(s) 370, 714
CfoI GCGC 1 cut(s) 1072
Cfr13I GGNCC 2 cut(s) 470, 935
CseI GACGC 5 cut(s) 96, 113, 300, 376, 805
Csp6I GTAC 2 cut(s) 64, 292
CviAII CATG 4 cut(s) 806, 832, 841, 898
CviQI GTAC 2 cut(s) 64, 292
DdeI CTNAG 2 cut(s) 630, 801
DpnI GATC 5 cut(s) 75, 220, 564, 706, 750
DpnII GATC 5 cut(s) 73, 218, 562, 704, 748
DraIII CACNNNGTG 1 cut(s) 653
Eam1104I CTCTTC 4 cut(s) 252, 344, 438, 702
EarI CTCTTC 4 cut(s) 252, 344, 438, 702
Eco130I CCWWGG 2 cut(s) 567, 897
Eco24I GRGCYC 1 cut(s) 638
Eco47I GGWCC 2 cut(s) 470, 935
Eco57I CTGAAG 2 cut(s) 462, 846
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 2 cut(s) 15, 699
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 2 cut(s) 567, 897
EcoT22I ATGCAT 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 2 cut(s) 567, 897
Esp3I CGTCTC 2 cut(s) 323, 924
FaeI CATG 4 cut(s) 809, 835, 844, 901
FaqI GGGAC 1 cut(s) 483
FatI CATG 4 cut(s) 805, 831, 840, 897
FauI CCCGC 2 cut(s) 289, 1083
FblI GTMKAC 1 cut(s) 189
FokI GGATG 2 cut(s) 496, 825
FriOI GRGCYC 1 cut(s) 638
FspBI CTAG 2 cut(s) 212, 885
GlaI GCGC 1 cut(s) 1071
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 2 cut(s) 500, 1031
HgaI GACGC 5 cut(s) 96, 113, 300, 376, 805
HhaI GCGC 1 cut(s) 1072
Hin1I GRCGYC 3 cut(s) 311, 797, 1065
Hin1II CATG 4 cut(s) 809, 835, 844, 901
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HinfI GANTC 5 cut(s) 154, 180, 269, 644, 960
HpaII CCGG 2 cut(s) 500, 1031
HphI GGTGA 3 cut(s) 247, 731, 1073
Hpy166II GTNNAC 3 cut(s) 190, 692, 1096
Hpy188I TCNGA 7 cut(s) 54, 185, 218, 324, 403, 679, 865
Hpy188III TCNNGA 1 cut(s) 746
Hpy8I GTNNAC 3 cut(s) 190, 692, 1096
Hpy99I CGWCG 8 cut(s) 107, 112, 269, 316, 319, 328, 670, 1070
HpyAV CCTTC 9 cut(s) 11, 274, 349, 568, 785, 870, 870, 950, 973
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 2 cut(s) 47, 1065
HpyCH4V TGCA 7 cut(s) 82, 96, 364, 511, 619, 816, 1106
HpyF3I CTNAG 2 cut(s) 630, 801
HpySE526I ACGT 2 cut(s) 47, 1065
Hsp92I GRCGYC 3 cut(s) 311, 797, 1065
Hsp92II CATG 4 cut(s) 809, 835, 844, 901
HspAI GCGC 1 cut(s) 1070
KflI GGGWCCC 1 cut(s) 470
Kzo9I GATC 5 cut(s) 73, 218, 562, 704, 748
LmnI GCTCC 3 cut(s) 142, 148, 195
LweI GCATC 1 cut(s) 803
MaeI CTAG 2 cut(s) 212, 885
MaeII ACGT 2 cut(s) 47, 1065
MaeIII GTNAC 3 cut(s) 235, 645, 1061
MalI GATC 5 cut(s) 75, 220, 564, 706, 750
MboI GATC 5 cut(s) 73, 218, 562, 704, 748
MboII GAAGA 6 cut(s) 189, 213, 269, 361, 455, 689
MflI RGATCY 4 cut(s) 73, 562, 704, 748
MhlI GDGCHC 2 cut(s) 638, 770
MluCI AATT 1 cut(s) 458
MluI ACGCGT 1 cut(s) 105
MlyI GAGTC 2 cut(s) 263, 653
MmeI TCCRAC 2 cut(s) 347, 381
Mph1103I ATGCAT 1 cut(s) 818
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 714
MspI CCGG 2 cut(s) 500, 1031
MspR9I CCNGG 1 cut(s) 823
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 823
MvnI CGCG 3 cut(s) 107, 296, 1070
NcoI CCATGG 1 cut(s) 897
NdeII GATC 5 cut(s) 73, 218, 562, 704, 748
NlaIII CATG 4 cut(s) 809, 835, 844, 901
NlaIV GGNNCC 7 cut(s) 471, 472, 564, 706, 750, 769, 1018
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 3 cut(s) 235, 645, 1061
NsiI ATGCAT 1 cut(s) 818
NspI RCATGY 2 cut(s) 809, 844
PaeI GCATGC 1 cut(s) 809
PciI ACATGT 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 3 cut(s) 154, 180, 960
Pfl23II CGTACG 1 cut(s) 291
PleI GAGTC 2 cut(s) 263, 652
PpsI GAGTC 2 cut(s) 263, 652
PpuMI RGGWCCY 1 cut(s) 470
PscI ACATGT 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 821
PspGI CCWGG 1 cut(s) 821
PspLI CGTACG 1 cut(s) 291
PspN4I GGNNCC 7 cut(s) 471, 472, 564, 706, 750, 769, 1018
PspPI GGNCC 2 cut(s) 470, 935
PspPPI RGGWCCY 1 cut(s) 470
PstI CTGCAG 2 cut(s) 84, 621
PstNI CAGNNNCTG 2 cut(s) 370, 714
PsuI RGATCY 4 cut(s) 73, 562, 704, 748
PvuII CAGCTG 1 cut(s) 714
RsaI GTAC 2 cut(s) 65, 293
RsaNI GTAC 2 cut(s) 64, 292
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 5 cut(s) 73, 218, 562, 704, 748
Sau96I GGNCC 2 cut(s) 470, 935
SchI GAGTC 2 cut(s) 263, 653
ScrFI CCNGG 1 cut(s) 823
SduI GDGCHC 2 cut(s) 638, 770
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 2 cut(s) 80, 617
SinI GGWCC 2 cut(s) 470, 935
SphI GCATGC 1 cut(s) 809
Sse9I AATT 1 cut(s) 458
SspMI CTAG 2 cut(s) 212, 885
StyD4I CCNGG 1 cut(s) 821
StyI CCWWGG 2 cut(s) 567, 897
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 2 cut(s) 50, 1068
TaqI TCGA 2 cut(s) 116, 227
TasI AATT 1 cut(s) 458
TauI GCSGC 5 cut(s) 278, 287, 376, 386, 527
TfiI GAWTC 3 cut(s) 154, 180, 960
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 3 cut(s) 235, 645, 1061
Tsp45I GTSAC 3 cut(s) 235, 645, 1061
TspGWI ACGGA 2 cut(s) 341, 347
VpaK11BI GGWCC 2 cut(s) 470, 935
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 2 cut(s) 15, 699
XapI RAATTY 1 cut(s) 458
XceI RCATGY 2 cut(s) 809, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 212, 885
ZraI GACGTC 1 cut(s) 1066
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.