RchiOBHm_Chr5g0000661

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
381448 .. 381738
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28219

Sequence Viewer

Length: 291 bp
ATGAGGCAGGGAAAGGCCATGGATATCTCACCACAGCTTTTGCAGTACAGATATCACTTTGGCATTGCAATCTTCGTTTCATTAGTCTTTTCCTTGCTGTTATATGCAGCCCCTCGGATTCTAACCATTCTGAGTTACTTTTGGCCTCTCCTGGCCTCCACAACTCTGTTTTTGGTGGCGATAATCGCCTTTGGTGGTGTTTCGAAGCTGTCAACCGAAGTTCATGGTGAAACGCAAGGTCAAGGAATCATTGATTATGTTGCTGGCCGCCCAGACTACCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.68

Weight (kDa)

6.02

Isoelectric Point (pI)

23.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16400
fragaria_vesca FvH4_3g00490
malus_domestica MD00G1056900.v1.1
prunus_persica Prupe.4G005500_v2.0.a1
pyrus_communis pycom05g32680
rosa_chinensis RchiOBHm_Chr5g0000661
rosa_multiflora Rmu_sc0011992.1_g000011
rosa_roxburghii Rroxscaffold_1G00075540
rosa_rugosa Rorug04G0385600
rosa_samantha Rh5AG005700 Rh5BG007300 Rh5CG006100 Rh5DG005900
rosa_wichuraiana Rw5G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 265
AfaI GTAC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 37, 208
AluI AGCT 2 cut(s) 37, 208
AoxI GGCC 4 cut(s) 15, 143, 153, 265
ApeKI GCWGC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 21, 239
AsuII TTCGAA 1 cut(s) 203
BbvI GCAGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 281
BisI GCNGC 2 cut(s) 108, 268
BlsI GCNGC 2 cut(s) 109, 269
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 18, 113
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 18, 113
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 4 cut(s) 17, 145, 155, 267
BsnI GGCC 4 cut(s) 17, 145, 155, 267
Bsp119I TTCGAA 1 cut(s) 203
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 268
BspANI GGCC 4 cut(s) 17, 145, 155, 267
BspCNI CTCAG 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 18, 113
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 4 cut(s) 17, 145, 155, 267
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 2 cut(s) 19, 224
CviJI RGCY 7 cut(s) 17, 37, 110, 145, 155, 208, 267
CviKI_1 RGCY 7 cut(s) 17, 37, 110, 145, 155, 208, 267
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 18
Eco32I GATATC 2 cut(s) 25, 53
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 2 cut(s) 25, 53
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 22, 227
FaiI YATR 5 cut(s) 20, 103, 105, 225, 258
FatI CATG 2 cut(s) 18, 223
Fnu4HI GCNGC 2 cut(s) 108, 268
Fsp4HI GCNGC 2 cut(s) 108, 268
FspBI CTAG 1 cut(s) 281
GluI GCNGC 2 cut(s) 108, 268
HaeIII GGCC 4 cut(s) 17, 145, 155, 267
Hin1II CATG 2 cut(s) 22, 227
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 2 cut(s) 118, 246
HphI GGTGA 2 cut(s) 21, 239
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 117, 132
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 43, 68, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 2 cut(s) 22, 227
LpnPI CCDG 4 cut(s) 137, 164, 249, 285
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 134
MboII GAAGA 1 cut(s) 64
MnlI CCTC 3 cut(s) 123, 156, 166
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 18
NlaIII CATG 2 cut(s) 22, 227
NspV TTCGAA 1 cut(s) 203
PfeI GAWTC 2 cut(s) 118, 246
PkrI GCNGC 2 cut(s) 109, 269
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 2 cut(s) 108, 268
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 39, 210, 241, 282
SfuI TTCGAA 1 cut(s) 203
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 203
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 118, 246
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 69, 212
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.