pycom05g32680

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
31988464 .. 31988733
270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32680.1

Sequence Viewer

Length: 270 bp
ATGGATATCTCGCCACAACTTCTGCAATACCGATATCATTTTGTCATAGCAATCTTTGTTTCGCTAATATTTTCTTTAATGTTGTATGCAGCCCCTAGGATTCTAACCATTTTGGGTTACTTTTGGCCTCTCTTTGCCTCCACAACAATATTTTTGGTGGCAGTAATCGCCTTTGGTGGTGTTTCACAGCTGTCTACAGAATCACACGGTGAAGCACAAGGTCAAGGAATCATAGATTATGTTGCTGACCAGACAGACTACACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

4.51

Isoelectric Point (pI)

25.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16400
fragaria_vesca FvH4_3g00490
malus_domestica MD00G1056900.v1.1
prunus_persica Prupe.4G005500_v2.0.a1
pyrus_communis pycom05g32680
rosa_chinensis RchiOBHm_Chr5g0000661
rosa_multiflora Rmu_sc0011992.1_g000011
rosa_roxburghii Rroxscaffold_1G00075540
rosa_rugosa Rorug04G0385600
rosa_samantha Rh5AG005700 Rh5BG007300 Rh5CG006100 Rh5DG005900
rosa_wichuraiana Rw5G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 209
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 95
BbvI GCAGC 1 cut(s) 101
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 90
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 127
BsnI GGCC 1 cut(s) 127
BspANI GGCC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 127
CviJI RGCY 3 cut(s) 92, 127, 190
CviKI_1 RGCY 3 cut(s) 92, 127, 190
DraIII CACNNNGTG 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 95
Eco32I GATATC 2 cut(s) 7, 35
EcoRV GATATC 2 cut(s) 7, 35
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 4 cut(s) 47, 87, 233, 240
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 127
HinfI GANTC 3 cut(s) 100, 200, 228
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 25, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 116
MluCI AATT 1 cut(s) 265
MnlI CCTC 2 cut(s) 138, 148
MseI TTAA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 167
PfeI GAWTC 3 cut(s) 100, 200, 228
PkrI GCNGC 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 90
SetI ASST 2 cut(s) 192, 223
SfcI CTRYAG 1 cut(s) 195
SgeI CNNG 6 cut(s) 22, 108, 218, 230, 236, 262
Sse9I AATT 1 cut(s) 265
SspI AATATT 2 cut(s) 69, 150
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 209
TasI AATT 1 cut(s) 265
TfiI GAWTC 3 cut(s) 100, 200, 228
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.