Prupe.4G005500_v2.0.a1

Encoded by

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
321517 .. 322301
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G005500.1

Sequence Viewer

Length: 273 bp
ATGGATGATATCTCACCACAGCTTTTCAAGTACAGATATCATTTTGGCATAGCGATCTTCGTTTCATTAATATTTTCCTTGCTTCTGTATGCAGCACCTCGGCTTCTCTCCATTTTAGGTTACTTTTGGCCTCTCTTTGCCTCCACAACTCTGTTCTTGGTGGCAGTAATCGCCTTTGGTGGTGTTTCTCAGCTGTCAACAGAAACACACGGTGAAACACAAGGTCAAGGAATCATTGATTATGTTGCTGGCAAGCCAGACTACACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.0

Weight (kDa)

5.37

Isoelectric Point (pI)

13.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16400
fragaria_vesca FvH4_3g00490
malus_domestica MD00G1056900.v1.1
prunus_persica Prupe.4G005500_v2.0.a1
pyrus_communis pycom05g32680
rosa_chinensis RchiOBHm_Chr5g0000661
rosa_multiflora Rmu_sc0011992.1_g000011
rosa_roxburghii Rroxscaffold_1G00075540
rosa_rugosa Rorug04G0385600
rosa_samantha Rh5AG005700 Rh5BG007300 Rh5CG006100 Rh5DG005900
rosa_wichuraiana Rw5G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 2 cut(s) 22, 193
AluI AGCT 2 cut(s) 22, 193
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 92
AseI ATTAAT 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 6, 224
BbvI GCAGC 1 cut(s) 104
BfaI CTAG 1 cut(s) 271
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 1 cut(s) 130
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 54
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 250, 254
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 250, 254
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 5 cut(s) 22, 103, 130, 193, 256
CviKI_1 RGCY 5 cut(s) 22, 103, 130, 193, 256
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraIII CACNNNGTG 1 cut(s) 212
Eco32I GATATC 2 cut(s) 10, 38
EcoRV GATATC 2 cut(s) 10, 38
FaiI YATR 3 cut(s) 50, 90, 243
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 271
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 231
HphI GGTGA 2 cut(s) 6, 224
Hpy166II GTNNAC 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 189
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 1 cut(s) 234
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 49
MnlI CCTC 3 cut(s) 108, 141, 151
MseI TTAA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 79
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 54
SetI ASST 5 cut(s) 24, 100, 121, 195, 226
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 212
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 54
VspI ATTAAT 1 cut(s) 68
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.