Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002029

Physical Location & Seq

Genomic Coordinates Reverse (-)

15874608 .. 15891667

Gene Structure 17060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1078900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGAAACGGAAGACATAATAGCAGAAGAGCTGCAAAACGTAGAGGCTGAAATCCAAGGCGTCCAAGACCAAATTAAGATATTGCTTGACCAACAAGAGAGGTTATATGAAAGGCAATCTGAACTGCAAGCTTTACTTGAAGCATCTAAAGATTCAGCATATCCTGTTAATGGTGCTTCAAATGCTGAGGAAAACTGGTCTGGGATATTTGAGTGGGATTCTCGAGCTAATGATGTTAGGTTCAATATATTTGGCATATCCACATATCGTGCAAATCAGCGAGAGATTATCAATGCTGTGATGAGTGGAAGAGATGTTTTAGTGATTATGGCTGCGGGTGGTGGCAAGAGCCTCTGTTACCAGCTTCCAGCAATCCTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCATTGATTCAGGACCAGGTGATGGGTTTGTCAGCTTTAGGCATTCCAGCTCATATGTTGACATCAACTACTAATAAGGAGGAGGAGAAGTCAATATACAAGACCCTTGAAAAGGGGGAGGGAGATTTGAAAATATTGTACGTGACGCCAGAAAAGATATCAAAGAGTAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCACGCTGGTCGTCTATCTCTCATTTCTATTGACGAGGCACATTGCTGCAGCCAGTGGGGTCATGATTTTCGACCTGACTACAAAAGTCTTGGTATCCTTAAGACTCAGTTTCCCAATGTTCCTGTGATTGCTCTGACTGCCACTGCTACCCACAAAGTGCAAAGTGATCTGATGGAGATGCTTCACATTCCTAGATGTGTAAAATTTGTCAGCACAGTCAACAGGCCAAATCTATTTTATATGGTACGAGAGAAGTCTTCAGTTGGCAAGGTGGTGGTTGATGAAATTGCAGAATTTATTCATCACTCTTATTCAGATCATGAATCTGGCATAGTGTATTGCTTTTCTCGAAAGGAATGTGAACAGGTTGCAAAGGAGCTGCGTGAGAAAGGAATATCAGCTCATCATTATCATGCAGACATGGATGCAAATGCTCGTGAAAATGTTCATAAGCGGTGGAGCAATGGAAGGCTACAAGTCATCGTAGGCACTGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAAACATACTACCAGGAAAGCGGCCGAGCTGGACGAGATGGACTCCCTTCTCAATGCCTACTTTATTTCAGACCCGGTGATGTTCCTAGACAGAGTTCAATGGTCTTCTATGAAAATTCTGGATTGCAGAACCTTTATGACATAGTACGATATTGTCAGTCAAAAAGACAATGCCGCCATAGTTCGTTTTTCCGCCATTTTGCTGAGCCATTACAGGACTGCAATGGGATGTGTGACAACTGTGCATTTTCCAATGAGGTTAAAGAACTGGATGTGTCACGTCATGCAAAGGTTATTATTTCTTTGCTGCAAGATGTACAAGAAAATGATCAAAGATTGACTGTGCTGCAATTAGTTGATAAAATCAAAATAAAGCACAAGGAACTAGGTTCTGAGCTGAACAGAGAGGAAATAGAGAAGCTTGTCATACAGCTTATATTAGATCGATTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCTACAAATGCATATGTAACAATAGGACCCTTGGCAAAGCAAGTATTGCAAGGTAAGAGAAGCATAAAGCTTGAAATGACTAGCGGGCAAAAGAAAGTAGCTGGTATGAGATCAGTTAAACACTGTCGTGCTTCCTCTACTCTGGAATTGAAGCTTGATGAGCTGAGGAAGGAACTATCTTCAGTTCATGGAGGAATATTTCCACATTCTGTTCTGTCTACTCAACAAATCAGCTTGATAAGTGCCCAGAAGCCAAATTCGATGGAACTGTTGGAGAATATAATTGGAAAAGTGAAGACGGAGAAATACGGAAATAGAATCCTTGAACAAGTGACAAAGTATGCTGATTCGGCGCAGCCTGATGAGGTTAAAGAAGAAGAAGAAGAAGAAAATGAAAACAGAGCCTCAAAAAGGCTAAAGAGCAAAAAGCAACTTATCCTTGTTGAGAGTAGTGATGATGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016592 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

709

Amino Acids

80.22

Weight (kDa)

6.42

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	91 - 259	1.5e-26	DEAD/DEAH box helicase
Helicase_C	PF00271	302 - 407	1.2e-20	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	419 - 474	2.7e-10	RecQ zinc-binding
RQC	PF09382	481 - 584	2.3e-06	RQC domain
HRDC	PF00570	604 - 662	5.7e-07	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360
fragaria_vesca	FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180
malus_domestica	MD00G1078900.v1.1 MD11G1048700.v1.1
prunus_persica	Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1
pyrus_communis	pycom16g25560
rosa_chinensis	RchiOBHm_Chr7g0213961
rosa_laevigata	RLG00000002767
rosa_multiflora	Rmu_sc0000328.1_g000007
rosa_roxburghii	Rroxscaffold_3G00245620
rosa_rugosa	Rorug06G0229700 Rorug07G0145100
rosa_samantha	Rh7AG278100 Rh7BG271700 Rh7CG297100 Rh7DG283700
rosa_wichuraiana	Rw7G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	1877
AciI	CCGC	6 cut(s)	335, 1069, 1200, 1354, 1372, 1743
AcoI	YGGCCR	1 cut(s)	1201
AcsI	RAATTY	5 cut(s)	818, 908, 1294, 1640, 1915
AcuI	CTGAAG	2 cut(s)	858, 1824
AcyI	GRCGYC	2 cut(s)	60, 560
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	4 cut(s)	554, 861, 1326, 1497
AfiI	CCNNNNNNNGG	4 cut(s)	170, 436, 526, 2070
AflII	CTTAAG	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	1460
AjnI	CCWGG	2 cut(s)	429, 1191
AleI	CACNNNNGTG	1 cut(s)	1785
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	839, 1201
ApeKI	GCWGC	8 cut(s)	31, 332, 660, 663, 994, 1486, 1525, 2014
ApoI	RAATTY	5 cut(s)	818, 908, 1294, 1640, 1915
ArsI	GACNNNNNNTTYG	2 cut(s)	1125, 1157
Asp700I	GAANNNNTTC	3 cut(s)	912, 1059, 1641
AspLEI	GCGC	1 cut(s)	2014
AspS9I	GGNCC	2 cut(s)	427, 1685
AsuC2I	CCSGG	1 cut(s)	1254
AsuHPI	GGTGA	2 cut(s)	445, 1268
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	427, 1685
BaeGI	GKGCMC	1 cut(s)	1906
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	4 cut(s)	18, 864, 1276, 1961
BbvCI	CCTCAGC	2 cut(s)	186, 1823
BbvI	GCAGC	8 cut(s)	18, 319, 647, 675, 981, 1473, 1512, 2026
BccI	CCATC	7 cut(s)	377, 430, 621, 781, 1164, 1211, 1915
BciT130I	CCWGG	2 cut(s)	431, 1193
BciVI	GTATCC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	1507
BcnI	CCSGG	1 cut(s)	1254
BfaI	CTAG	4 cut(s)	807, 1266, 1565, 1740
BfmI	CTRYAG	1 cut(s)	661
BfrI	CTTAAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	719
BlpI	GCTNAGC	1 cut(s)	1383
Bme1390I	CCNGG	3 cut(s)	431, 1193, 1254
Bme18I	GGWCC	2 cut(s)	427, 1685
BmeT110I	CYCGRG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	1460
BmgT120I	GGNCC	2 cut(s)	427, 1685
BmiI	GGNNCC	1 cut(s)	1687
BmrFI	CCNGG	3 cut(s)	431, 1193, 1254
BmsI	GCATC	3 cut(s)	152, 783, 1030
BpiI	GAAGAC	4 cut(s)	18, 864, 1276, 1961
BplI	GAGNNNNNCTC	2 cut(s)	1206, 1238
Bpu10I	CCTNAGC	2 cut(s)	186, 1823
Bpu1102I	GCTNAGC	1 cut(s)	1383
BpuMI	CCSGG	1 cut(s)	1254
Bsa29I	ATCGAT	1 cut(s)	1624
BsaAI	YACGTR	1 cut(s)	556
BsaHI	GRCGYC	2 cut(s)	60, 560
BsaJI	CCNNGG	2 cut(s)	55, 1689
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 436, 526, 2070
Bse1I	ACTGG	3 cut(s)	200, 667, 1452
Bse3DI	GCAATG	3 cut(s)	655, 1084, 1408
BseBI	CCWGG	2 cut(s)	431, 1193
BseCI	ATCGAT	1 cut(s)	1624
BseDI	CCNNGG	2 cut(s)	55, 1689
BseGI	GGATG	4 cut(s)	1045, 1152, 1413, 1456
BseLI	CCNNNNNNNGG	4 cut(s)	170, 436, 526, 2070
BseMI	GCAATG	3 cut(s)	655, 1084, 1408
BseMII	CTCAG	5 cut(s)	177, 734, 1374, 1563, 1814
BseNI	ACTGG	3 cut(s)	200, 667, 1452
BseRI	GAGGAG	2 cut(s)	509, 512
BseSI	GKGCMC	1 cut(s)	1906
BseX3I	CGGCCG	1 cut(s)	1201
BseXI	GCAGC	8 cut(s)	18, 319, 647, 675, 981, 1473, 1512, 2026
Bsh1285I	CGRYCG	1 cut(s)	1204
BshFI	GGCC	2 cut(s)	841, 1203
BshVI	ATCGAT	1 cut(s)	1624
BsiEI	CGRYCG	1 cut(s)	1204
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	1254
BslI	CCNNNNNNNGG	4 cut(s)	170, 436, 526, 2070
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	841, 1203
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	1906
Bsp1407I	TGTACA	1 cut(s)	1495
Bsp143I	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
Bsp1720I	GCTNAGC	1 cut(s)	1383
BspACI	CCGC	6 cut(s)	335, 1069, 1200, 1354, 1372, 1743
BspANI	GGCC	2 cut(s)	841, 1203
BspCNI	CTCAG	5 cut(s)	178, 733, 1375, 1564, 1815
BspDI	ATCGAT	1 cut(s)	1624
BspHI	TCATGA	3 cut(s)	676, 934, 2123
BspLI	GGNNCC	1 cut(s)	1687
BspMAI	CTGCAG	1 cut(s)	665
BspQI	GCTCTTC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	3 cut(s)	655, 1084, 1408
BsrGI	TGTACA	1 cut(s)	1495
BsrI	ACTGG	3 cut(s)	200, 667, 1452
BssECI	CCNNGG	2 cut(s)	55, 1689
BssMI	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
BssNI	GRCGYC	2 cut(s)	60, 560
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	55, 1689
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	2 cut(s)	431, 1193
Bst4CI	ACNGT	6 cut(s)	832, 1108, 1421, 1522, 1784, 1929
Bst6I	CTCTTC	2 cut(s)	21, 304
BstACI	GRCGYC	2 cut(s)	60, 560
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	1705
BstAUI	TGTACA	1 cut(s)	1495
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	129, 1745
BstDEI	CTNAG	6 cut(s)	186, 720, 1166, 1383, 1572, 1823
BstENI	CCTNNNNNAGG	2 cut(s)	524, 2068
BstF5I	GGATG	4 cut(s)	1045, 1152, 1413, 1456
BstHHI	GCGC	1 cut(s)	2014
BstKTI	GATC	5 cut(s)	784, 934, 1510, 1624, 1772
BstMBI	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
BstMCI	CGRYCG	1 cut(s)	1204
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 752, 1667, 1705, 1819, 2009
BstNI	CCWGG	2 cut(s)	431, 1193
BstSCI	CCNGG	3 cut(s)	429, 1191, 1252
BstSFI	CTRYAG	1 cut(s)	661
BstSLI	GKGCMC	1 cut(s)	1906
BstV1I	GCAGC	8 cut(s)	18, 319, 647, 675, 981, 1473, 1512, 2026
BstV2I	GAAGAC	4 cut(s)	18, 864, 1276, 1961
BstXI	CCANNNNNNTGG	1 cut(s)	620
BstZI	CGGCCG	1 cut(s)	1201
Bsu15I	ATCGAT	1 cut(s)	1624
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	841, 1203
BsuTUI	ATCGAT	1 cut(s)	1624
BtrI	CACGTC	1 cut(s)	1460
BtsCI	GGATG	4 cut(s)	1045, 1152, 1413, 1456
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	674, 756, 1104, 1780
Cac8I	GCNNGC	2 cut(s)	129, 1745
CciI	TCATGA	3 cut(s)	676, 934, 2123
CfoI	GCGC	1 cut(s)	2014
Cfr13I	GGNCC	2 cut(s)	427, 1685
ClaI	ATCGAT	1 cut(s)	1624
CseI	GACGC	2 cut(s)	49, 568
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	553, 860, 1325, 1496
CviAII	CATG	8 cut(s)	677, 935, 1028, 1036, 1120, 1463, 1847, 2124
CviQI	GTAC	4 cut(s)	553, 860, 1325, 1496
DdeI	CTNAG	6 cut(s)	186, 720, 1166, 1383, 1572, 1823
DpnI	GATC	5 cut(s)	783, 933, 1509, 1623, 1771
DpnII	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
DraIII	CACNNNGTG	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	1201
EagI	CGGCCG	1 cut(s)	1201
Eam1104I	CTCTTC	2 cut(s)	21, 304
EarI	CTCTTC	2 cut(s)	21, 304
EciI	GGCGGA	1 cut(s)	1361
EclXI	CGGCCG	1 cut(s)	1201
Eco130I	CCWWGG	2 cut(s)	55, 1689
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	427, 1685
Eco52I	CGGCCG	1 cut(s)	1201
Eco57I	CTGAAG	2 cut(s)	858, 1824
Eco88I	CYCGRG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	2 cut(s)	524, 2068
EcoO109I	RGGNCCY	1 cut(s)	1685
EcoRII	CCWGG	2 cut(s)	429, 1191
EcoRV	GATATC	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	55, 1689
EcoT22I	ATGCAT	1 cut(s)	1672
ErhI	CCWWGG	2 cut(s)	55, 1689
FaeI	CATG	8 cut(s)	680, 938, 1031, 1039, 1123, 1466, 1850, 2127
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	8 cut(s)	676, 934, 1027, 1035, 1119, 1462, 1846, 2123
FauI	CCCGC	2 cut(s)	328, 1736
FauNDI	CATATG	2 cut(s)	468, 1672
FbaI	TGATCA	1 cut(s)	1507
FblI	GTMKAC	1 cut(s)	1877
FokI	GGATG	4 cut(s)	1052, 1139, 1420, 1463
FspBI	CTAG	4 cut(s)	807, 1266, 1565, 1740
GlaI	GCGC	1 cut(s)	2013
HaeIII	GGCC	2 cut(s)	841, 1203
HapII	CCGG	1 cut(s)	1254
HgaI	GACGC	2 cut(s)	49, 568
HhaI	GCGC	1 cut(s)	2014
Hin1I	GRCGYC	2 cut(s)	60, 560
Hin1II	CATG	8 cut(s)	680, 938, 1031, 1039, 1123, 1466, 1850, 2127
Hin6I	GCGC	1 cut(s)	2012
HinP1I	GCGC	1 cut(s)	2012
HincII	GTYRAC	2 cut(s)	474, 835
HindII	GTYRAC	2 cut(s)	474, 835
HindIII	AAGCTT	4 cut(s)	129, 1598, 1727, 1811
HpaII	CCGG	1 cut(s)	1254
HphI	GGTGA	2 cut(s)	445, 1268
Hpy166II	GTNNAC	4 cut(s)	474, 835, 977, 1878
Hpy188I	TCNGA	6 cut(s)	121, 750, 786, 931, 1250, 1573
Hpy8I	GTNNAC	4 cut(s)	474, 835, 977, 1878
HpyAV	CCTTC	4 cut(s)	386, 1077, 1236, 1822
HpyCH4III	ACNGT	6 cut(s)	832, 1108, 1421, 1522, 1784, 1929
HpyCH4IV	ACGT	3 cut(s)	39, 555, 1459
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 752, 1667, 1705, 1819, 2009
HpyF3I	CTNAG	6 cut(s)	186, 720, 1166, 1383, 1572, 1823
HpySE526I	ACGT	3 cut(s)	39, 555, 1459
Hsp92I	GRCGYC	2 cut(s)	60, 560
Hsp92II	CATG	8 cut(s)	680, 938, 1031, 1039, 1123, 1466, 1850, 2127
HspAI	GCGC	1 cut(s)	2012
Ksp22I	TGATCA	1 cut(s)	1507
Kzo9I	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	991, 1074
Lsp1109I	GCAGC	8 cut(s)	18, 319, 647, 675, 981, 1473, 1512, 2026
LweI	GCATC	3 cut(s)	152, 783, 1030
MabI	ACCWGGT	1 cut(s)	429
MaeI	CTAG	4 cut(s)	807, 1266, 1565, 1740
MaeII	ACGT	3 cut(s)	39, 555, 1459
MaeIII	GTNAC	6 cut(s)	356, 556, 1412, 1455, 1675, 1990
MalI	GATC	5 cut(s)	783, 933, 1509, 1623, 1771
MboI	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
MhlI	GDGCHC	1 cut(s)	1906
MlyI	GAGTC	2 cut(s)	712, 1215
MmeI	TCCRAC	1 cut(s)	1911
Mph1103I	ATGCAT	1 cut(s)	1672
MroXI	GAANNNNTTC	3 cut(s)	912, 1059, 1641
MseI	TTAA	6 cut(s)	75, 168, 714, 1440, 1776, 2028
MslI	CAYNNNNRTG	2 cut(s)	1026, 1785
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	1254
MspR9I	CCNGG	3 cut(s)	431, 1193, 1254
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	431, 1193
MwoI	GCNNNNNNNGC	6 cut(s)	182, 752, 1667, 1705, 1819, 2009
NciI	CCSGG	1 cut(s)	1254
NdeI	CATATG	2 cut(s)	468, 1672
NdeII	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
NlaIII	CATG	8 cut(s)	680, 938, 1031, 1039, 1123, 1466, 1850, 2127
NlaIV	GGNNCC	1 cut(s)	1687
NmeAIII	GCCGAG	1 cut(s)	1229
NmuCI	GTSAC	4 cut(s)	556, 1412, 1455, 1990
NsiI	ATGCAT	1 cut(s)	1672
OliI	CACNNNNGTG	1 cut(s)	1785
PaeR7I	CTCGAG	1 cut(s)	222
PagI	TCATGA	3 cut(s)	676, 934, 2123
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	3 cut(s)	912, 1059, 1641
PfeI	GAWTC	8 cut(s)	152, 218, 421, 938, 1125, 1977, 2006, 2120
PflMI	CCANNNNNTGG	1 cut(s)	436
PleI	GAGTC	2 cut(s)	712, 1215
PpsI	GAGTC	2 cut(s)	712, 1215
Ppu21I	YACGTR	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	1685
Psp5II	RGGWCCY	1 cut(s)	1685
Psp6I	CCWGG	2 cut(s)	429, 1191
PspGI	CCWGG	2 cut(s)	429, 1191
PspN4I	GGNNCC	1 cut(s)	1687
PspPI	GGNCC	2 cut(s)	427, 1685
PspPPI	RGGWCCY	1 cut(s)	1685
PstI	CTGCAG	1 cut(s)	665
RsaI	GTAC	4 cut(s)	554, 861, 1326, 1497
RsaNI	GTAC	4 cut(s)	553, 860, 1325, 1496
RseI	CAYNNNNRTG	2 cut(s)	1026, 1785
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	6 cut(s)	75, 168, 714, 1440, 1776, 2028
Sau3AI	GATC	5 cut(s)	781, 931, 1507, 1621, 1769
Sau96I	GGNCC	2 cut(s)	427, 1685
SchI	GAGTC	2 cut(s)	712, 1215
ScrFI	CCNGG	3 cut(s)	431, 1193, 1254
SduI	GDGCHC	1 cut(s)	1906
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	3 cut(s)	152, 783, 1030
SfcI	CTRYAG	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	427, 1685
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	1026, 1785
SmlI	CTYRAG	2 cut(s)	222, 713
SmoI	CTYRAG	2 cut(s)	222, 713
SsiI	CCGC	6 cut(s)	335, 1069, 1200, 1354, 1372, 1743
SspI	AATATT	2 cut(s)	549, 1857
SspMI	CTAG	4 cut(s)	807, 1266, 1565, 1740
StyD4I	CCNGG	3 cut(s)	429, 1191, 1252
StyI	CCWWGG	2 cut(s)	55, 1689
TaaI	ACNGT	6 cut(s)	832, 1108, 1421, 1522, 1784, 1929
TaiI	ACGT	3 cut(s)	42, 558, 1462
TaqI	TCGA	5 cut(s)	223, 685, 964, 1624, 1919
TatI	WGTACW	1 cut(s)	1495
TauI	GCSGC	2 cut(s)	1203, 1356
TfiI	GAWTC	8 cut(s)	152, 218, 421, 938, 1125, 1977, 2006, 2120
Tru1I	TTAA	6 cut(s)	75, 168, 714, 1440, 1776, 2028
Tru9I	TTAA	6 cut(s)	75, 168, 714, 1440, 1776, 2028
TscAI	CASTG	4 cut(s)	674, 763, 1111, 1787
TseFI	GTSAC	4 cut(s)	556, 1412, 1455, 1990
TseI	GCWGC	8 cut(s)	31, 332, 660, 663, 994, 1486, 1525, 2014
Tsp45I	GTSAC	4 cut(s)	556, 1412, 1455, 1990
TspDTI	ATGAA	9 cut(s)	123, 405, 905, 912, 951, 1052, 1305, 1835, 2067
TspGWI	ACGGA	3 cut(s)	23, 1973, 1983
TspRI	CASTG	4 cut(s)	674, 763, 1111, 1787
Van91I	CCANNNNNTGG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	2 cut(s)	427, 1685
XagI	CCTNNNNNAGG	2 cut(s)	524, 2068
XapI	RAATTY	5 cut(s)	818, 908, 1294, 1640, 1915
XhoI	CTCGAG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	1877
XmnI	GAANNNNTTC	3 cut(s)	912, 1059, 1641
XspI	CTAG	4 cut(s)	807, 1266, 1565, 1740
Zsp2I	ATGCAT	1 cut(s)	1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.