Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002029

Physical Location & Seq

Genomic Coordinates Forward (+)

11435382 .. 11439587

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGTGGTACTTTGTTGCCGCGCTTCTCACCGTCCTCACCAGCTCTCAGGGAATCTTGACAACTCTCTCTCAAAGTAATGGCAAATATAAGTACGACTATGCAACTGTTCCGTTTCTTGCTGAAGTTTTCAAGCTAGCAGTTTCCTGTGTTTTTCTTTGGAGAGAGTGTCGCACATCTCCTTCTGTACGAATGACTACAGATTGGAAGAGCGTGCGCTTATATCCTATTCCTTCAATCATATATCTAGTTCATAACAATGTTCAGTTTGCTACTCTTGTTTATGTGGATACTTCCACATATCAGATAATGGGTAATCTGAAAATTGTTACCACAGGCATATTATTCAGGCTATTTCTAAGAAGAAAACTTTCTAATCTGCAATGGATGGCAATTGTTTTATTAGCTGTTGGAACGACCACAAGCCAGGTTAAAGGCTGTGGAGAAGCATCATGTGATTCTCTGTTCTCAGCACCAATCCAAGGATATACACTGGGCATCCTGTCTGCTTGTATGTCAGCATTAGCAGGTGTTTACACAGAGTTTCTTATGAAGAAGAACAATGATAGCCTGTACTGGCAGAATGTACAATTGTATACGTTTGGTGTAATTTTCAACATGGCACGGCTTGTCTTCGATGACTTCAGGGGTGGATTTGAGAATGGACCTTGGTGGCAACGGATTTTCAATGGATATAGTGTTACGACTTGGTTGGTGGTGTTAAATCTTGGGTCCACTGGCTTGCTGGTTTCATGGTTGATGAAGTATGCTGACAATATTGTGAAGGTGTATTCTACTTCAATGGCAATGCTGCTGACAATGGTTTTATCTGTATACCTTTTCACTTTCAAGCCCACATTGCAGCTCTTTTTGGGTATTATTATCTGTATGATGTCACTACACATGTACTTTGCCCCTCCAAACACGCTGGTAGACATACCATTGCCTGTAAAAGCAACCCCTGAGAGTCTGAAAGAAGTTGCTGTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016592 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

331

Amino Acids

37.37

Weight (kDa)

9.02

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuc_sug_transp	PF04142	4 - 303	4.3e-55	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360
fragaria_vesca	FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180
malus_domestica	MD00G1078900.v1.1 MD11G1048700.v1.1
prunus_persica	Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1
pyrus_communis	pycom16g25560
rosa_chinensis	RchiOBHm_Chr7g0213961
rosa_laevigata	RLG00000002767
rosa_multiflora	Rmu_sc0000328.1_g000007
rosa_roxburghii	Rroxscaffold_3G00245620
rosa_rugosa	Rorug06G0229700 Rorug07G0145100
rosa_samantha	Rh7AG278100 Rh7BG271700 Rh7CG297100 Rh7DG283700
rosa_wichuraiana	Rw7G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	3 cut(s)	596, 834, 933
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	144, 628
AfaI	GTAC	6 cut(s)	11, 95, 189, 575, 588, 908
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	7 cut(s)	133, 237, 616, 688, 801, 850, 992
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	45, 136, 407, 865
AluI	AGCT	4 cut(s)	45, 136, 407, 865
ApeKI	GCWGC	2 cut(s)	811, 862
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	25, 219
AspS9I	GGNCC	2 cut(s)	665, 732
AsuHPI	GGTGA	2 cut(s)	22, 31
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	665, 732
BbsI	GAAGAC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	798, 874
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	137, 248
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	3 cut(s)	21, 812, 863
BlsI	GCNGC	3 cut(s)	22, 813, 864
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	2 cut(s)	665, 732
BmgT120I	GGNCC	2 cut(s)	665, 732
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	428
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	458, 507
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	481, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	498, 581, 742
Bse3DI	GCAATG	4 cut(s)	389, 813, 857, 941
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	481, 668
BseGI	GGATG	2 cut(s)	393, 498
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	4 cut(s)	389, 813, 857, 941
BseMII	CTCAG	3 cut(s)	62, 483, 954
BseNI	ACTGG	3 cut(s)	498, 581, 742
BseXI	GCAGC	2 cut(s)	798, 874
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	586
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	3 cut(s)	61, 482, 955
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	203
BsrDI	GCAATG	4 cut(s)	389, 813, 857, 941
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	498, 581, 742
BssECI	CCNNGG	2 cut(s)	481, 668
BssNAI	GTATAC	2 cut(s)	597, 835
BssT1I	CCWWGG	2 cut(s)	481, 668
Bst1107I	GTATAC	2 cut(s)	597, 835
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	34, 109
Bst6I	CTCTTC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	138, 215, 743
BstDEI	CTNAG	4 cut(s)	48, 359, 469, 963
BstF5I	GGATG	2 cut(s)	393, 498
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	25, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	859
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	798, 874
BstV2I	GAAGAC	1 cut(s)	625
BstZ17I	GTATAC	2 cut(s)	597, 835
BsuI	GTATCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	393, 498
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	3 cut(s)	11, 491, 735
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	138, 215, 743
CfoI	GCGC	2 cut(s)	25, 219
Cfr13I	GGNCC	2 cut(s)	665, 732
Csp6I	GTAC	6 cut(s)	10, 94, 188, 574, 587, 907
CviAII	CATG	4 cut(s)	453, 619, 753, 904
CviQI	GTAC	6 cut(s)	10, 94, 188, 574, 587, 907
DdeI	CTNAG	4 cut(s)	48, 359, 469, 963
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	481, 668
Eco47I	GGWCC	2 cut(s)	665, 732
Eco57I	CTGAAG	2 cut(s)	144, 628
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	481, 668
ErhI	CCWWGG	2 cut(s)	481, 668
FaeI	CATG	4 cut(s)	456, 622, 756, 907
FatI	CATG	4 cut(s)	452, 618, 752, 903
FblI	GTMKAC	3 cut(s)	596, 834, 933
Fnu4HI	GCNGC	3 cut(s)	21, 812, 863
FokI	GGATG	2 cut(s)	400, 485
Fsp4HI	GCNGC	3 cut(s)	21, 812, 863
FspBI	CTAG	2 cut(s)	137, 248
GlaI	GCGC	2 cut(s)	24, 218
GluI	GCNGC	3 cut(s)	21, 812, 863
HhaI	GCGC	2 cut(s)	25, 219
Hin1II	CATG	4 cut(s)	456, 622, 756, 907
Hin6I	GCGC	2 cut(s)	23, 217
HinP1I	GCGC	2 cut(s)	23, 217
HinfI	GANTC	3 cut(s)	54, 458, 967
HphI	GGTGA	2 cut(s)	22, 31
Hpy166II	GTNNAC	5 cut(s)	535, 597, 735, 835, 934
Hpy188I	TCNGA	3 cut(s)	306, 321, 972
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	5 cut(s)	535, 597, 735, 835, 934
HpyAV	CCTTC	3 cut(s)	192, 243, 778
HpyCH4III	ACNGT	2 cut(s)	34, 109
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	4 cut(s)	4, 104, 382, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	859
HpyF3I	CTNAG	4 cut(s)	48, 359, 469, 963
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	4 cut(s)	456, 622, 756, 907
HspAI	GCGC	2 cut(s)	23, 217
LguI	GCTCTTC	1 cut(s)	203
Lsp1109I	GCAGC	2 cut(s)	798, 874
LweI	GCATC	2 cut(s)	458, 507
MaeI	CTAG	2 cut(s)	137, 248
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	3 cut(s)	328, 700, 894
MboII	GAAGA	5 cut(s)	220, 375, 565, 568, 625
MfeI	CAATTG	2 cut(s)	393, 590
MluCI	AATT	4 cut(s)	324, 393, 590, 609
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	2 cut(s)	47, 927
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	2 cut(s)	432, 722
MslI	CAYNNNNRTG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	2 cut(s)	393, 590
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	859
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	456, 622, 756, 907
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	894
NspI	RCATGY	1 cut(s)	907
PaqCI	CACCTGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	903
PciSI	GCTCTTC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	54, 458
PkrI	GCNGC	3 cut(s)	22, 813, 864
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
PscI	ACATGT	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	2 cut(s)	665, 732
RsaI	GTAC	6 cut(s)	11, 95, 189, 575, 588, 908
RsaNI	GTAC	6 cut(s)	10, 94, 188, 574, 587, 907
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	432, 722
SatI	GCNGC	3 cut(s)	21, 812, 863
Sau96I	GGNCC	2 cut(s)	665, 732
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	458, 507
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	665, 732
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	324, 393, 590, 609
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	2 cut(s)	137, 248
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	481, 668
TaaI	ACNGT	2 cut(s)	34, 109
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	324, 393, 590, 609
TatI	WGTACW	3 cut(s)	573, 586, 906
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	54, 458
Tru1I	TTAA	2 cut(s)	432, 722
Tru9I	TTAA	2 cut(s)	432, 722
TscAI	CASTG	2 cut(s)	498, 742
TseFI	GTSAC	1 cut(s)	894
TseI	GCWGC	2 cut(s)	811, 862
Tsp45I	GTSAC	1 cut(s)	894
TspDTI	ATGAA	4 cut(s)	242, 566, 741, 776
TspGWI	ACGGA	2 cut(s)	102, 694
TspRI	CASTG	2 cut(s)	498, 742
VpaK11BI	GGWCC	2 cut(s)	665, 732
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmiI	GTMKAC	3 cut(s)	596, 834, 933
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	2 cut(s)	137, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.