Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002029

Physical Location & Seq

Genomic Coordinates Reverse (-)

38658787 .. 38671749

Gene Structure 12963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGAGACCCAAGAGGCTTTAATAGAAGAAGAGCTGCTGAACGTGGAGCTTGAAATTGAAAGCGTCCAAGACCAAATCAAAGTATTGCTTGACCAACAAGAGAGGTTATATGAAAGAAAATCTGAACTACAAGCTCTACTGGAAGCTTCCAAAGGTCACGGACCCTCGGATAATAGGGCTTCAACAGCCACAGAAGACTGGTCTGGATCATTTGAGTGGGATTCTCAAGCTGATGATGTTAGGTCTTGTTTCCTACTGTTGAAAGCAATGTCCCCATTTGGAATTATAAGACCTTGCAGAAGAGCTTATAAGATTATTAATGCTGTCATGAGTGGAAGAGATGTTCTAGTGATTATGGCTGCAGGAGGTGGCAAGAGTCTCTGTTACCAGCTTCCAGCTATTCTTCGTGATGGAGTTGCTCTTGTTGTCAGCCCACTGCTTTCTTTGATTCAGGACCAGGTGATGGGCTTGGAAGCTTTAGGGATTCCTGCTCATATGTTGACATCTACTACAAGTAAGGAGGAAGAGAAGTTAATATACAAGGCCCTCGAAAAGGGTGAAGGAGATTTGAAAATATTGTATGTGACGCCAGAAAAGATATCAAGGAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCCCTAATTTCTATTGATGAGGCACATTGTTGCAGCCAATGGGGCCATGATTTTCGACCCGATTACAAAAATCTTGGTATCCTCAAGACTCAGTTTCCCAATGTTCCAGTGATTGCTTTGACTGCAACTGCTACACAGAAAGTCCAAAGTGATCTGATGGAGATGCTCCACATTCCAAGATGTGTAAAGTTTGTACGAGAGAAGTCTTCAATTGGCAAAGTGGTGGTTGATGAAATCGCTGAATTCATTCGAGACTCTTATTCAGACAATGAATCTGGCATCGTTTATTGCTTCTCTAGAAAAGAATGTGAACAGGTTGCAAAGGAGTTGCGTGAGAGGGGAATATCAGCTCATCATTATCATGCAGATATGGACGTAAATGCACGTGAAAATGTTCATATGCGGTGGAGCAAGAGCAAATTACAAGTCATCGTTGGCACTGTAGCATTTGGTATGGGAATCAACAAACCTGATGTCAGGTTCGTCATCCATCACAGCTTGAGTAAATCAATGGAGACATACTACCAGGAAAGTGGCCGTGCTGGACGAGATGGACTCCCTTCGCAATGCCTACTTTACTTTAGACCTGCTGACATGCCTAGGCAGAGTTCAATGGTCTTCTATGAAAACTCCGGACTGCAGAACCTTTATGACATTGTACGCTATTGTCAGTCAAAAAGACAATGCCGTCATAGCTCTTTCTTTCGCCACTTTGCTGAGCCATTACAGGACTGCAATGGGATGTGTGACAACTGTGCATTTTCAAATGAGGTTAAAGAAGTAGACGTCTCTCGTCATGCGAAGCTTATGGTTACTATGCTGAAAGATGTGCAAGAAAATGATCAGAGATTGACAGTGTTACAATTAGTTGATAAAATTAAGATAAAGCACAAGGAAGTAGGTTCGGAGCTGAAGAAAGAGGAAATAGAGCAGCTTGTCATCCAGCTTATATTAGGTAGAGTTTTGAAAGAAGAATTTCAGCATACAGCTTACGCCACAAATGCGTATGTAACATTAGGACCCTTGGCAAAGCAGGTATTGCAAGGGAGAAGTAGTGTTAAGCTTGAAATGTCTACCGGACAGAAGAAAGTAGCTGGTGTAAGATCAGTTAAACGTAGTCGTGCTTCTTCATGTCTGGAACAAAAGCTCGACGAGCTGCGGAAGGAACTCTCTTCAGATCATGGAGGGATATTCCCTCATTCTGTTCTGTCTACTCAACAAATCAGCATGATAGATGACCAGAAGCCAAATTCAATGAAACAGTTGGAGAAGATCATTGGGAAAGTCAAGACAGAGAAATACGGAAGTAGAATCCTTGAACAAGTGAGTATGTATGCAGATGCAAAGCAGCCTGTTGAGGATAAAGAAGAACAAGAAACTGAAAATAGATCCTCAAAAAGGCTAAAGGACACAGAGCCGCTTCTGATAGAGAGTAGTGATGATGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016592 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

702

Amino Acids

79.52

Weight (kDa)

6.5

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	104 - 268	6e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	299 - 404	1.5e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	416 - 471	6.3e-10	RecQ zinc-binding
HRDC	PF00570	600 - 659	3.5e-07	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360
fragaria_vesca	FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180
malus_domestica	MD00G1078900.v1.1 MD11G1048700.v1.1
prunus_persica	Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1
pyrus_communis	pycom16g25560
rosa_chinensis	RchiOBHm_Chr7g0213961
rosa_laevigata	RLG00000002767
rosa_multiflora	Rmu_sc0000328.1_g000007
rosa_roxburghii	Rroxscaffold_3G00245620
rosa_rugosa	Rorug06G0229700 Rorug07G0145100
rosa_samantha	Rh7AG278100 Rh7BG271700 Rh7CG297100 Rh7DG283700
rosa_wichuraiana	Rw7G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	287, 309
AasI	GACNNNNNNGTC	1 cut(s)	1344
AatII	GACGTC	1 cut(s)	1446
Acc36I	ACCTGC	2 cut(s)	1252, 1681
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	3 cut(s)	1440, 1730, 1868
AccIII	TCCGGA	1 cut(s)	1289
AciI	CCGC	3 cut(s)	1060, 1816, 2075
AclWI	GGATC	2 cut(s)	214, 2040
AcoI	YGGCCR	1 cut(s)	1192
AcsI	RAATTY	3 cut(s)	899, 1631, 1906
AcuI	CTGAAG	2 cut(s)	1589, 1815
AcvI	CACGTG	1 cut(s)	1043
AcyI	GRCGYC	2 cut(s)	587, 1443
AfaI	GTAC	2 cut(s)	852, 1317
AfiI	CCNNNNNNNGG	3 cut(s)	463, 553, 2055
AjnI	CCWGG	2 cut(s)	456, 1182
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
Alw26I	GTCTC	5 cut(s)	383, 659, 903, 1166, 1450
AlwI	GGATC	2 cut(s)	214, 2040
Aor13HI	TCCGGA	1 cut(s)	1289
AoxI	GGCC	3 cut(s)	543, 700, 1192
ApeKI	GCWGC	6 cut(s)	34, 359, 690, 1588, 1813, 2005
ApoI	RAATTY	3 cut(s)	899, 1631, 1906
ArsI	GACNNNNNNTTYG	4 cut(s)	1068, 1100, 1116, 1148
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	3 cut(s)	903, 1050, 1632
AspA2I	CCTAGG	1 cut(s)	1256
AspS9I	GGNCC	5 cut(s)	161, 454, 544, 700, 1676
AsuHPI	GGTGA	2 cut(s)	472, 569
AvaII	GGWCC	3 cut(s)	161, 454, 1676
AvrII	CCTAGG	1 cut(s)	1256
BarI	GAAGNNNNNNTAC	4 cut(s)	521, 553, 1765, 1797
BbrPI	CACGTG	1 cut(s)	1043
BbsI	GAAGAC	3 cut(s)	201, 855, 1267
BbvI	GCAGC	6 cut(s)	21, 346, 702, 1600, 1800, 2017
BccI	CCATC	6 cut(s)	404, 457, 648, 808, 1155, 1202
BceAI	ACGGC	2 cut(s)	1179, 1329
BciT130I	CCWGG	2 cut(s)	458, 1184
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	1498
BcoDI	GTCTC	5 cut(s)	383, 659, 903, 1166, 1450
BfaI	CTAG	3 cut(s)	347, 954, 1257
BfmI	CTRYAG	3 cut(s)	360, 1098, 1295
BfuAI	ACCTGC	2 cut(s)	1252, 1681
BfuI	GTATCC	1 cut(s)	746
BglI	GCCNNNNNGGC	1 cut(s)	699
BisI	GCNGC	7 cut(s)	35, 360, 691, 1589, 1814, 2006, 2075
BlnI	CCTAGG	1 cut(s)	1256
BlpI	GCTNAGC	1 cut(s)	1374
BlsI	GCNGC	7 cut(s)	36, 361, 692, 1590, 1815, 2007, 2076
Bme1390I	CCNGG	2 cut(s)	458, 1184
Bme18I	GGWCC	3 cut(s)	161, 454, 1676
BmgT120I	GGNCC	5 cut(s)	161, 454, 544, 700, 1676
BmiI	GGNNCC	3 cut(s)	163, 701, 1678
BmrFI	CCNGG	2 cut(s)	458, 1184
BmsI	GCATC	3 cut(s)	810, 945, 1987
BpiI	GAAGAC	3 cut(s)	201, 855, 1267
BplI	GAGNNNNNCTC	2 cut(s)	1197, 1229
Bpu1102I	GCTNAGC	1 cut(s)	1374
BpuEI	CTTGAG	3 cut(s)	210, 725, 1177
BsaAI	YACGTR	1 cut(s)	1043
BsaHI	GRCGYC	2 cut(s)	587, 1443
BsaJI	CCNNGG	3 cut(s)	165, 1256, 1680
BsaWI	WCCGGW	2 cut(s)	1289, 1733
BsaXI	ACNNNNNCTCC	2 cut(s)	1696, 1726
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 553, 2055
Bse1I	ACTGG	3 cut(s)	144, 203, 764
Bse3DI	GCAATG	3 cut(s)	273, 1229, 1399
BseAI	TCCGGA	1 cut(s)	1289
BseBI	CCWGG	2 cut(s)	458, 1184
BseDI	CCNNGG	3 cut(s)	165, 1256, 1680
BseGI	GGATG	3 cut(s)	1143, 1404, 1596
BseLI	CCNNNNNNNGG	3 cut(s)	463, 553, 2055
BseMI	GCAATG	3 cut(s)	273, 1229, 1399
BseMII	CTCAG	2 cut(s)	761, 1365
BseNI	ACTGG	3 cut(s)	144, 203, 764
BseXI	GCAGC	6 cut(s)	21, 346, 702, 1600, 1800, 2017
BshFI	GGCC	3 cut(s)	545, 702, 1194
BsiSI	CCGG	2 cut(s)	1290, 1734
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	463, 553, 2055
BsmAI	GTCTC	5 cut(s)	383, 659, 903, 1166, 1450
BsmBI	CGTCTC	2 cut(s)	659, 1450
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	545, 702, 1194
Bsp13I	TCCGGA	1 cut(s)	1289
Bsp143I	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
Bsp1720I	GCTNAGC	1 cut(s)	1374
BspACI	CCGC	3 cut(s)	1060, 1816, 2075
BspANI	GGCC	3 cut(s)	545, 702, 1194
BspCNI	CTCAG	2 cut(s)	760, 1366
BspEI	TCCGGA	1 cut(s)	1289
BspHI	TCATGA	2 cut(s)	327, 2105
BspLI	GGNNCC	3 cut(s)	163, 701, 1678
BspMAI	CTGCAG	2 cut(s)	364, 1299
BspMI	ACCTGC	2 cut(s)	1252, 1681
BspPI	GGATC	2 cut(s)	214, 2040
BspQI	GCTCTTC	2 cut(s)	24, 295
BsrDI	GCAATG	3 cut(s)	273, 1229, 1399
BsrI	ACTGG	3 cut(s)	144, 203, 764
BssECI	CCNNGG	3 cut(s)	165, 1256, 1680
BssMI	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
BssNI	GRCGYC	2 cut(s)	587, 1443
BssT1I	CCWWGG	2 cut(s)	1256, 1680
Bst2UI	CCWGG	2 cut(s)	458, 1184
Bst4CI	ACNGT	5 cut(s)	258, 1099, 1412, 1513, 1920
Bst6I	CTCTTC	5 cut(s)	24, 295, 331, 519, 1834
BstACI	GRCGYC	2 cut(s)	587, 1443
BstAPI	GCANNNNNTGC	1 cut(s)	1696
BstBAI	YACGTR	1 cut(s)	1043
BstDEI	CTNAG	2 cut(s)	747, 1374
BstENI	CCTNNNNNAGG	2 cut(s)	551, 2053
BstF5I	GGATG	3 cut(s)	1143, 1404, 1596
BstKTI	GATC	7 cut(s)	209, 811, 1501, 1763, 1837, 1932, 2048
BstMAI	GTCTC	5 cut(s)	383, 659, 903, 1166, 1450
BstMBI	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 699, 779, 1350, 1658, 1696, 1810
BstNI	CCWGG	2 cut(s)	458, 1184
BstNSI	RCATGY	1 cut(s)	1255
BstSCI	CCNGG	2 cut(s)	456, 1182
BstSFI	CTRYAG	3 cut(s)	360, 1098, 1295
BstV1I	GCAGC	6 cut(s)	21, 346, 702, 1600, 1800, 2017
BstV2I	GAAGAC	3 cut(s)	201, 855, 1267
BstX2I	RGATCY	1 cut(s)	2045
BstXI	CCANNNNNNTGG	2 cut(s)	647, 1190
BstYI	RGATCY	1 cut(s)	2045
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	545, 702, 1194
BtsCI	GGATG	3 cut(s)	1143, 1404, 1596
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	4 cut(s)	434, 771, 1095, 1518
BveI	ACCTGC	2 cut(s)	1252, 1681
CciI	TCATGA	2 cut(s)	327, 2105
Cfr13I	GGNCC	5 cut(s)	161, 454, 544, 700, 1676
CseI	GACGC	2 cut(s)	52, 595
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	851, 1316
CviQI	GTAC	2 cut(s)	851, 1316
DdeI	CTNAG	2 cut(s)	747, 1374
DpnI	GATC	7 cut(s)	208, 810, 1500, 1762, 1836, 1931, 2047
DpnII	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
DrdI	GACNNNNNNGTC	1 cut(s)	1344
DseDI	GACNNNNNNGTC	1 cut(s)	1344
EaeI	YGGCCR	1 cut(s)	1192
Eam1104I	CTCTTC	5 cut(s)	24, 295, 331, 519, 1834
EarI	CTCTTC	5 cut(s)	24, 295, 331, 519, 1834
Eco130I	CCWWGG	2 cut(s)	1256, 1680
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	161, 454, 1676
Eco57I	CTGAAG	2 cut(s)	1589, 1815
Eco72I	CACGTG	1 cut(s)	1043
EcoNI	CCTNNNNNAGG	2 cut(s)	551, 2053
EcoO109I	RGGNCCY	2 cut(s)	544, 1676
EcoRI	GAATTC	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	456, 1182
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	2 cut(s)	1256, 1680
ErhI	CCWWGG	2 cut(s)	1256, 1680
Esp3I	CGTCTC	2 cut(s)	659, 1450
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	256
FauNDI	CATATG	2 cut(s)	495, 1056
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	3 cut(s)	1440, 1730, 1868
Fnu4HI	GCNGC	7 cut(s)	35, 360, 691, 1589, 1814, 2006, 2075
FokI	GGATG	3 cut(s)	1130, 1411, 1583
Fsp4HI	GCNGC	7 cut(s)	35, 360, 691, 1589, 1814, 2006, 2075
FspBI	CTAG	3 cut(s)	347, 954, 1257
GluI	GCNGC	7 cut(s)	35, 360, 691, 1589, 1814, 2006, 2075
HaeIII	GGCC	3 cut(s)	545, 702, 1194
HapII	CCGG	2 cut(s)	1290, 1734
HgaI	GACGC	2 cut(s)	52, 595
Hin1I	GRCGYC	2 cut(s)	587, 1443
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	4 cut(s)	144, 474, 1460, 1718
HpaII	CCGG	2 cut(s)	1290, 1734
HphI	GGTGA	2 cut(s)	472, 569
Hpy166II	GTNNAC	5 cut(s)	501, 968, 1441, 1731, 1869
Hpy188I	TCNGA	8 cut(s)	124, 169, 813, 922, 1503, 1564, 1834, 2082
Hpy8I	GTNNAC	5 cut(s)	501, 968, 1441, 1731, 1869
Hpy99I	CGWCG	1 cut(s)	1811
HpyAV	CCTTC	3 cut(s)	554, 1227, 1813
HpyCH4III	ACNGT	5 cut(s)	258, 1099, 1412, 1513, 1920
HpyCH4IV	ACGT	5 cut(s)	42, 1032, 1042, 1443, 1771
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 699, 779, 1350, 1658, 1696, 1810
HpyF3I	CTNAG	2 cut(s)	747, 1374
HpySE526I	ACGT	5 cut(s)	42, 1032, 1042, 1443, 1771
Hsp92I	GRCGYC	2 cut(s)	587, 1443
Kpn2I	TCCGGA	1 cut(s)	1289
Ksp22I	TGATCA	1 cut(s)	1498
Kzo9I	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
LguI	GCTCTTC	2 cut(s)	24, 295
LmnI	GCTCC	5 cut(s)	46, 606, 828, 1065, 1564
Lsp1109I	GCAGC	6 cut(s)	21, 346, 702, 1600, 1800, 2017
LweI	GCATC	3 cut(s)	810, 945, 1987
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	3 cut(s)	347, 954, 1257
MaeII	ACGT	5 cut(s)	42, 1032, 1042, 1443, 1771
MaeIII	GTNAC	7 cut(s)	155, 383, 583, 1403, 1468, 1515, 1666
MalI	GATC	7 cut(s)	208, 810, 1500, 1762, 1836, 1931, 2047
MboI	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	2045
MlyI	GAGTC	4 cut(s)	385, 739, 905, 1206
MmeI	TCCRAC	1 cut(s)	1902
MroI	TCCGGA	1 cut(s)	1289
MroXI	GAANNNNTTC	3 cut(s)	903, 1050, 1632
MseI	TTAA	7 cut(s)	20, 318, 533, 1431, 1536, 1716, 1767
MslI	CAYNNNNRTG	2 cut(s)	214, 1017
MspI	CCGG	2 cut(s)	1290, 1734
MspR9I	CCNGG	2 cut(s)	458, 1184
MunI	CAATTG	1 cut(s)	867
MvaI	CCWGG	2 cut(s)	458, 1184
MwoI	GCNNNNNNNGC	7 cut(s)	185, 699, 779, 1350, 1658, 1696, 1810
NdeI	CATATG	2 cut(s)	495, 1056
NdeII	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
NlaIV	GGNNCC	3 cut(s)	163, 701, 1678
NmuCI	GTSAC	3 cut(s)	155, 583, 1403
NspI	RCATGY	1 cut(s)	1255
PagI	TCATGA	2 cut(s)	327, 2105
PciSI	GCTCTTC	2 cut(s)	24, 295
PdmI	GAANNNNTTC	3 cut(s)	903, 1050, 1632
PfeI	GAWTC	7 cut(s)	221, 448, 484, 929, 1116, 1968, 2102
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	7 cut(s)	36, 361, 692, 1590, 1815, 2007, 2076
PleI	GAGTC	4 cut(s)	384, 739, 905, 1206
PmaCI	CACGTG	1 cut(s)	1043
PmlI	CACGTG	1 cut(s)	1043
PpsI	GAGTC	4 cut(s)	384, 739, 905, 1206
Ppu21I	YACGTR	1 cut(s)	1043
PpuMI	RGGWCCY	1 cut(s)	1676
PshBI	ATTAAT	1 cut(s)	318
PsiI	TTATAA	2 cut(s)	287, 309
Psp5II	RGGWCCY	1 cut(s)	1676
Psp6I	CCWGG	2 cut(s)	456, 1182
PspCI	CACGTG	1 cut(s)	1043
PspGI	CCWGG	2 cut(s)	456, 1182
PspN4I	GGNNCC	3 cut(s)	163, 701, 1678
PspPI	GGNCC	5 cut(s)	161, 454, 544, 700, 1676
PspPPI	RGGWCCY	1 cut(s)	1676
PstI	CTGCAG	2 cut(s)	364, 1299
PsuI	RGATCY	1 cut(s)	2045
RsaI	GTAC	2 cut(s)	852, 1317
RsaNI	GTAC	2 cut(s)	851, 1316
RseI	CAYNNNNRTG	2 cut(s)	214, 1017
SapI	GCTCTTC	2 cut(s)	24, 295
SaqAI	TTAA	7 cut(s)	20, 318, 533, 1431, 1536, 1716, 1767
SatI	GCNGC	7 cut(s)	35, 360, 691, 1589, 1814, 2006, 2075
Sau3AI	GATC	7 cut(s)	206, 808, 1498, 1760, 1834, 1929, 2045
Sau96I	GGNCC	5 cut(s)	161, 454, 544, 700, 1676
SchI	GAGTC	4 cut(s)	385, 739, 905, 1206
ScrFI	CCNGG	2 cut(s)	458, 1184
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	3 cut(s)	810, 945, 1987
SfcI	CTRYAG	3 cut(s)	360, 1098, 1295
SinI	GGWCC	3 cut(s)	161, 454, 1676
SmiMI	CAYNNNNRTG	2 cut(s)	214, 1017
SmlI	CTYRAG	3 cut(s)	225, 740, 1156
SmoI	CTYRAG	3 cut(s)	225, 740, 1156
SsiI	CCGC	3 cut(s)	1060, 1816, 2075
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	3 cut(s)	347, 954, 1257
StyD4I	CCNGG	2 cut(s)	456, 1182
StyI	CCWWGG	2 cut(s)	1256, 1680
TaaI	ACNGT	5 cut(s)	258, 1099, 1412, 1513, 1920
TaiI	ACGT	5 cut(s)	45, 1035, 1045, 1446, 1774
TaqI	TCGA	4 cut(s)	549, 712, 907, 1806
TauI	GCSGC	1 cut(s)	2077
TfiI	GAWTC	7 cut(s)	221, 448, 484, 929, 1116, 1968, 2102
Tru1I	TTAA	7 cut(s)	20, 318, 533, 1431, 1536, 1716, 1767
Tru9I	TTAA	7 cut(s)	20, 318, 533, 1431, 1536, 1716, 1767
TscAI	CASTG	4 cut(s)	441, 771, 1102, 1518
TseFI	GTSAC	3 cut(s)	155, 583, 1403
TseI	GCWGC	6 cut(s)	34, 359, 690, 1588, 1813, 2005
Tsp45I	GTSAC	3 cut(s)	155, 583, 1403
TspDTI	ATGAA	8 cut(s)	126, 892, 903, 942, 1043, 1296, 1776, 1928
TspGWI	ACGGA	2 cut(s)	174, 1974
TspRI	CASTG	4 cut(s)	441, 771, 1102, 1518
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	3 cut(s)	161, 454, 1676
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	2 cut(s)	551, 2053
XapI	RAATTY	3 cut(s)	899, 1631, 1906
XbaI	TCTAGA	1 cut(s)	953
XceI	RCATGY	1 cut(s)	1255
XmaJI	CCTAGG	1 cut(s)	1256
XmiI	GTMKAC	3 cut(s)	1440, 1730, 1868
XmnI	GAANNNNTTC	3 cut(s)	903, 1050, 1632
XspI	CTAG	3 cut(s)	347, 954, 1257
ZraI	GACGTC	1 cut(s)	1444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.