Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002029

Physical Location & Seq

Genomic Coordinates Reverse (-)

36876977 .. 36879260

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGTAGTAGAAGAAATTGTGATTGTTGGAGCTGGAATTGCTGGCCTTACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCAGAGAGTTTGAGGACGACTGGATTTGCATTCTCAACATGGACAAATGCCTGGAAGGCCTTGGATGCCATTGGAATTGGGGAATCTCTTCGGAGACAACACGAGACACTTCATAGGAATGTTACTTACTCAACAGTTTCTGGGCTTCCAGTGTTTGAGATGTCACTGAAGGACAAGGGAAAACAAGGAGACCATGAAGTTCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAGCCCTTGCAAATGAACTTCCTAGTGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGATGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTCAAGCCACCGGCCTTTACAGGGAGACATGGTATAAGAGGTCGTGCGAACTACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGACGATAAAACAGTTTATTGGTTCTTCACTTGGACTCCAACCAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGTTGAGCAAGCTGGGAAATATACCTGATGAAATAAAAGCTGTAATTAAAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCATGGGAGCTTCTTTGGGGAAATATTAGCAAAGGCAATGTTTGTGTAGCTGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCAACACTATGCCAAAAAATGCTTCAGACGACAGACCATATCTGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016592 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

320

Amino Acids

35.56

Weight (kDa)

9.12

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	6 - 305	4.4e-20	FAD binding domain
Lycopene_cycl	PF05834	7 - 200	1.1e-07	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360
fragaria_vesca	FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180
malus_domestica	MD00G1078900.v1.1 MD11G1048700.v1.1
prunus_persica	Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1
pyrus_communis	pycom16g25560
rosa_chinensis	RchiOBHm_Chr7g0213961
rosa_laevigata	RLG00000002767
rosa_multiflora	Rmu_sc0000328.1_g000007
rosa_roxburghii	Rroxscaffold_3G00245620
rosa_rugosa	Rorug06G0229700 Rorug07G0145100
rosa_samantha	Rh7AG278100 Rh7BG271700 Rh7CG297100 Rh7DG283700
rosa_wichuraiana	Rw7G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	2 cut(s)	293, 919
AfiI	CCNNNNNNNGG	2 cut(s)	528, 908
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 917, 949
AluBI	AGCT	9 cut(s)	35, 90, 418, 694, 710, 739, 767, 835, 875
AluI	AGCT	9 cut(s)	35, 90, 418, 694, 710, 739, 767, 835, 875
Alw26I	GTCTC	4 cut(s)	193, 203, 288, 526
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	5 cut(s)	46, 162, 450, 519, 910
ApeKI	GCWGC	2 cut(s)	418, 421
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	904
AxyI	CCTNAGG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	405, 408
BccI	CCATC	5 cut(s)	428, 449, 467, 635, 897
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	4 cut(s)	193, 203, 288, 526
BfaI	CTAG	2 cut(s)	357, 695
BglI	GCCNNNNNGGC	1 cut(s)	161
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	2 cut(s)	419, 422
BlsI	GCNGC	2 cut(s)	420, 423
Bme1390I	CCNGG	2 cut(s)	157, 902
Bme18I	GGWCC	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	2 cut(s)	439, 625
BmrFI	CCNGG	2 cut(s)	157, 902
BmsI	GCATC	5 cut(s)	160, 433, 781, 832, 871
BplI	GAGNNNNNCTC	2 cut(s)	870, 902
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	902
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	6 cut(s)	165, 381, 453, 827, 900, 907
BsaXI	ACNNNNNCTCC	4 cut(s)	523, 553, 655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 908
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	130, 254
Bse21I	CCTNAGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	613, 868
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	6 cut(s)	165, 381, 453, 827, 900, 907
BseGI	GGATG	6 cut(s)	175, 441, 627, 796, 823, 889
BseLI	CCNNNNNNNGG	2 cut(s)	528, 908
BseMI	GCAATG	2 cut(s)	613, 868
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	2 cut(s)	130, 254
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	405, 408
BseYI	CCCAGC	4 cut(s)	76, 502, 706, 739
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	5 cut(s)	48, 164, 452, 521, 912
BshNI	GGYRCC	1 cut(s)	623
BsiSI	CCGG	2 cut(s)	518, 902
BslI	CCNNNNNNNGG	2 cut(s)	528, 908
BsmAI	GTCTC	4 cut(s)	193, 203, 288, 526
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	5 cut(s)	48, 164, 452, 521, 912
Bso31I	GGTCTC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	580, 617
Bsp19I	CCATGG	1 cut(s)	827
BspANI	GGCC	5 cut(s)	48, 164, 452, 521, 912
BspCNI	CTCAG	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	439, 625
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	613, 868
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	130, 254
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	165, 381, 453, 827, 900, 907
BssMI	GATC	2 cut(s)	580, 617
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	5 cut(s)	165, 381, 453, 827, 907
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	241, 569, 649
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	46, 314, 737
BstDEI	CTNAG	3 cut(s)	61, 91, 711
BstDSI	CCRYGG	1 cut(s)	827
BstF5I	GGATG	6 cut(s)	175, 441, 627, 796, 823, 889
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	2 cut(s)	583, 620
BstMAI	GTCTC	4 cut(s)	193, 203, 288, 526
BstMBI	GATC	2 cut(s)	580, 617
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 161, 170, 881
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	155, 900
BstV1I	GCAGC	2 cut(s)	405, 408
BstX2I	RGATCY	1 cut(s)	617
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	5 cut(s)	48, 164, 452, 521, 912
BtgI	CCRYGG	1 cut(s)	827
BtsCI	GGATG	6 cut(s)	175, 441, 627, 796, 823, 889
BtsIMutI	CAGTG	3 cut(s)	261, 269, 780
Cac8I	GCNNGC	3 cut(s)	46, 314, 737
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	904
CviAII	CATG	6 cut(s)	144, 299, 536, 572, 592, 828
DdeI	CTNAG	3 cut(s)	61, 91, 711
DpnI	GATC	2 cut(s)	582, 619
DpnII	GATC	2 cut(s)	580, 617
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	5 cut(s)	165, 381, 453, 827, 907
Eco147I	AGGCCT	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	293, 919
Eco81I	CCTNAGG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	5 cut(s)	165, 381, 453, 827, 907
ErhI	CCWWGG	5 cut(s)	165, 381, 453, 827, 907
FaeI	CATG	6 cut(s)	147, 302, 539, 575, 595, 831
FatI	CATG	6 cut(s)	143, 298, 535, 571, 591, 827
Fnu4HI	GCNGC	2 cut(s)	419, 422
FokI	GGATG	6 cut(s)	182, 428, 614, 803, 810, 876
Fsp4HI	GCNGC	2 cut(s)	419, 422
FspBI	CTAG	2 cut(s)	357, 695
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	2 cut(s)	419, 422
GsaI	CCCAGC	4 cut(s)	80, 506, 710, 743
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	5 cut(s)	48, 164, 452, 521, 912
HapII	CCGG	2 cut(s)	518, 902
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	6 cut(s)	147, 302, 539, 575, 595, 831
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HinfI	GANTC	3 cut(s)	188, 401, 670
HpaII	CCGG	2 cut(s)	518, 902
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	5 cut(s)	87, 109, 198, 938, 962
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	154, 268
HpyCH4III	ACNGT	3 cut(s)	241, 569, 649
HpyCH4V	TGCA	5 cut(s)	134, 316, 344, 424, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 161, 170, 881
HpyF3I	CTNAG	3 cut(s)	61, 91, 711
Hsp92II	CATG	6 cut(s)	147, 302, 539, 575, 595, 831
HspAI	GCGC	1 cut(s)	884
Kzo9I	GATC	2 cut(s)	580, 617
LmnI	GCTCC	4 cut(s)	32, 87, 832, 891
Lsp1109I	GCAGC	2 cut(s)	405, 408
LweI	GCATC	5 cut(s)	160, 433, 781, 832, 871
MaeI	CTAG	2 cut(s)	357, 695
MaeIII	GTNAC	3 cut(s)	226, 267, 635
MalI	GATC	2 cut(s)	582, 619
MboI	GATC	2 cut(s)	580, 617
MboII	GAAGA	4 cut(s)	26, 185, 652, 712
MflI	RGATCY	1 cut(s)	617
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	7 cut(s)	18, 39, 81, 180, 722, 771, 785
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	4 cut(s)	10, 78, 312, 698
MnlI	CCTC	7 cut(s)	111, 312, 388, 391, 455, 539, 814
Mox20I	TGGCCA	1 cut(s)	912
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	2 cut(s)	414, 774
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	2 cut(s)	518, 902
MspR9I	CCNGG	2 cut(s)	157, 902
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	4 cut(s)	41, 161, 170, 881
NciI	CCSGG	1 cut(s)	902
NcoI	CCATGG	1 cut(s)	827
NdeII	GATC	2 cut(s)	580, 617
NlaIII	CATG	6 cut(s)	147, 302, 539, 575, 595, 831
NlaIV	GGNNCC	2 cut(s)	439, 625
NmuCI	GTSAC	2 cut(s)	267, 635
PceI	AGGCCT	1 cut(s)	164
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	188, 401
PkrI	GCNGC	2 cut(s)	420, 423
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	4 cut(s)	76, 502, 706, 739
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	439, 625
PspPI	GGNCC	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	710
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	414, 774
SatI	GCNGC	2 cut(s)	419, 422
Sau3AI	GATC	2 cut(s)	580, 617
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	157, 902
SfaNI	GCATC	5 cut(s)	160, 433, 781, 832, 871
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	7 cut(s)	18, 39, 81, 180, 722, 771, 785
SseBI	AGGCCT	1 cut(s)	164
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	2 cut(s)	357, 695
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	155, 900
StyI	CCWWGG	5 cut(s)	165, 381, 453, 827, 907
TaaI	ACNGT	3 cut(s)	241, 569, 649
TasI	AATT	7 cut(s)	18, 39, 81, 180, 722, 771, 785
TfiI	GAWTC	2 cut(s)	188, 401
Tru1I	TTAA	2 cut(s)	414, 774
Tru9I	TTAA	2 cut(s)	414, 774
TscAI	CASTG	3 cut(s)	261, 276, 787
TseFI	GTSAC	2 cut(s)	267, 635
TseI	GCWGC	2 cut(s)	418, 421
Tsp45I	GTSAC	2 cut(s)	267, 635
TspDTI	ATGAA	6 cut(s)	206, 315, 363, 580, 731, 771
TspRI	CASTG	3 cut(s)	261, 276, 787
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	357, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.