Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002029

Physical Location & Seq

Genomic Coordinates Reverse (-)

39468200 .. 39481779

Gene Structure 13580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGAGGCCCAAGAGGCTATAATAGAAGAAGAGCTGCTGAACGTGGTGCTTGAAATTGAAAGCGTCCAAGACCAAATCAAAGTATTGCTTGACCAACAAGAGAGGTTATATGAAAGACAATCTGAACTACAAGCTCTACTGGAAGCTTCCAAAGGTCACGGGCCCTCTGATAATAGGGCTTCAACAGCCACAGAAGACTGGTCTGGATCATTTGAGTGGGATTCTCAAGCTGATGATGTTAGGTTCAATGTATTTGGCATCTCCACATATCGTGCAAATCAGCGAGAGATTATTAATGCTGTCATGAGTGGAAGAGATGTTCTAGTGATTATGGCTGCAGGAGGTGGCAAGAGTCTCTGTTACCAGCTTCCAGCTATTCTTCGTGATGGAGTTGCTCTTGTTGTCAGCCCACTGCTTTCTTTGATTCAGGACCAGGTGATGGGCTTGGAAGCTTTGGGGATTCCAGCTCATATGTTGACATCAACTACAAGTAAGGAGGAAGAGAAGTTAATATATAAGGCCCTCGAAAAGGGTGAAGGAGATTTGAAAATCTTGTATGTGACGCCAGAAAAGATATCAAAGAGTAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCCCTAATTTCTATTGATGAGGCACATTGTTGCAGCCAATGGGGCCATGATTTTCGACCCGATTACAAAAATCTTGGGATCCTCAAGACTCAGTTTCCCAATGTTCCAGTGATTGCTTTGACTGCAACTGCTACGCAGAAAGTCCAAAGTGATCTGATGGAGATGCTCCACATTCCAAGATGTGTAAAGTTTGTCAGCACAGTCAACAGGCCAAATCTCTTTTATATGGTACGAGAGAAGTCTTCAATTGGCAAAGTGGTGGTTGATGAAATCGCTGAATTCATTCGAGACTCTTATTCAGACAACGAATCTGGCATCGTTTATTGCTTCTCTAGAAAAGAATGTGAACAGGTTGCAAAGGAGTTGCGTGAGAGGGGAATATCAGCTCATCATTATCATGCAGATATGGACGTAAATGCACGTGAAAATGTTCATATGCGCTGGAGCAAGAGCAAACTACAAGTCATCGTTGGCACTGTAGCATTTGGTATGGGAATCAACAAACCTGATGTCAGGTTCGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGCCGTGCTGGACGAGATGGACTCCCCTCTCAATGCCTACTTTACTTTAGACCTGCTGACATGCCTAGGCAGAGTTCAATGGTCTTCTATGAAAACTCCGGACTGCAGAATCTTTATGACATTGTACGCTATTGTCAGTCAAAAAGACAATGCCGTCGTAGCTCTTTCTTTCGCCACTTTGCTGAGCCATTACAGGACTGCAATGGGATGTGTGACAACTGTGCATTTTCAAATGAGGTTAAAGAAGTAGACGTCTCTCGTCATGCAAAGCTTATGGTTACCATGCTGAAAGATGTGCAAGAAAATGATCAGAGATTGACAATGTTACAATTAGTTGATAAAATTAAGATAAAGCACAAGGAAGTAGGTTCAGAGCTGAAGAGAGAGGAAATAGAGCAGCTTGTCATCCAGCTTATATTAGGTAGAGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCGTATGTAACATTAGGACCCTTGGCAAAGCAGGTATTGCAAGGGAGAAGTAGTGTTAAGCTTGAAATGTCTAGCGGCCAGAAGAAAGTAGCTGGTGTAAGATCGGTTAAACGTAGTCGTGCTTCTTCATGTCTGGAACAAAAGCTCGACGAGCTGCGGAAGGAACTTTCTTCAGATCATGGAGGGATATTCCCTCATTCTGTTCTGTCTACTCAACAAATCAGCATGATAGATGACCAGAAGCCAAATTCAATGAAACAGTTAGAGAAGATCATTGGGAAAGTCAAGACAGAGAAATACGGAAGTAGAATCCTTGAACAAGTGAGTATGTATGCAGATGCAAAGCAGCCTGTTGAGGATAAAGAAGAACAAGAAACTGAAAATAGATCCTCAAAAAGGCTAAAGAACACACAGCCGGTTCTTATAGAGAGTAGTGATGATGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016592 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

707

Amino Acids

80.03

Weight (kDa)

6.48

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	92 - 260	9.5e-27	DEAD/DEAH box helicase
Helicase_C	PF00271	303 - 408	1.5e-19	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	420 - 475	3.5e-10	RecQ zinc-binding
HRDC	PF00570	604 - 663	3.6e-07	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360 AT1G31360
fragaria_vesca	FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180 FvH4_5g24180
malus_domestica	MD00G1078900.v1.1 MD11G1048700.v1.1
prunus_persica	Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1 Prupe.5G018600_v2.0.a1
pyrus_communis	pycom16g25560
rosa_chinensis	RchiOBHm_Chr7g0213961
rosa_laevigata	RLG00000002767
rosa_multiflora	Rmu_sc0000328.1_g000007
rosa_roxburghii	Rroxscaffold_3G00245620
rosa_rugosa	Rorug06G0229700 Rorug07G0145100
rosa_samantha	Rh7AG278100 Rh7BG271700 Rh7CG297100 Rh7DG283700
rosa_wichuraiana	Rw7G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1356
AatII	GACGTC	1 cut(s)	1458
Acc36I	ACCTGC	2 cut(s)	1264, 1693
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	2 cut(s)	1452, 1880
AccIII	TCCGGA	1 cut(s)	1301
AciI	CCGC	2 cut(s)	1746, 1828
AclWI	GGATC	4 cut(s)	214, 706, 719, 2052
AcoI	YGGCCR	2 cut(s)	1204, 1747
AcsI	RAATTY	3 cut(s)	911, 1643, 1918
AcuI	CTGAAG	2 cut(s)	1601, 1827
AcvI	CACGTG	1 cut(s)	1055
AcyI	GRCGYC	2 cut(s)	563, 1455
AfaI	GTAC	2 cut(s)	864, 1329
AfiI	CCNNNNNNNGG	3 cut(s)	439, 529, 2067
AjnI	CCWGG	2 cut(s)	432, 1194
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
Alw26I	GTCTC	4 cut(s)	359, 635, 915, 1462
AlwI	GGATC	4 cut(s)	214, 706, 719, 2052
Aor13HI	TCCGGA	1 cut(s)	1301
AoxI	GGCC	7 cut(s)	6, 161, 519, 676, 842, 1204, 1747
ApaI	GGGCCC	1 cut(s)	165
ApeKI	GCWGC	6 cut(s)	34, 335, 666, 1600, 1825, 2017
ApoI	RAATTY	3 cut(s)	911, 1643, 1918
ArsI	GACNNNNNNTTYG	4 cut(s)	1080, 1112, 1128, 1160
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	3 cut(s)	915, 1062, 1644
AspA2I	CCTAGG	1 cut(s)	1268
AspLEI	GCGC	1 cut(s)	1074
AspS9I	GGNCC	7 cut(s)	7, 161, 162, 430, 520, 676, 1688
AsuHPI	GGTGA	2 cut(s)	448, 545
AvaII	GGWCC	2 cut(s)	430, 1688
AvrII	CCTAGG	1 cut(s)	1268
BaeGI	GKGCMC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	165
BarI	GAAGNNNNNNTAC	2 cut(s)	1777, 1809
BbrPI	CACGTG	1 cut(s)	1055
BbsI	GAAGAC	3 cut(s)	201, 867, 1279
BbvI	GCAGC	6 cut(s)	21, 322, 678, 1612, 1812, 2029
BccI	CCATC	6 cut(s)	380, 433, 624, 784, 1167, 1214
BceAI	ACGGC	2 cut(s)	1191, 1341
BciT130I	CCWGG	2 cut(s)	434, 1196
BclI	TGATCA	1 cut(s)	1510
BcoDI	GTCTC	4 cut(s)	359, 635, 915, 1462
BfaI	CTAG	4 cut(s)	323, 966, 1269, 1743
BfmI	CTRYAG	3 cut(s)	336, 1110, 1307
BfuAI	ACCTGC	2 cut(s)	1264, 1693
BglI	GCCNNNNNGGC	2 cut(s)	14, 675
BisI	GCNGC	7 cut(s)	35, 336, 667, 1601, 1747, 1826, 2018
BlnI	CCTAGG	1 cut(s)	1268
BlpI	GCTNAGC	1 cut(s)	1386
BlsI	GCNGC	7 cut(s)	36, 337, 668, 1602, 1748, 1827, 2019
Bme1390I	CCNGG	2 cut(s)	434, 1196
Bme18I	GGWCC	2 cut(s)	430, 1688
BmgT120I	GGNCC	7 cut(s)	7, 161, 162, 430, 520, 676, 1688
BmiI	GGNNCC	4 cut(s)	163, 677, 713, 1690
BmrFI	CCNGG	2 cut(s)	434, 1196
BmsI	GCATC	4 cut(s)	267, 786, 957, 1999
BpiI	GAAGAC	3 cut(s)	201, 867, 1279
BplI	GAGNNNNNCTC	2 cut(s)	1209, 1241
BpmI	CTGGAG	1 cut(s)	1096
Bpu1102I	GCTNAGC	1 cut(s)	1386
BpuEI	CTTGAG	3 cut(s)	210, 701, 1189
BsaAI	YACGTR	1 cut(s)	1055
BsaHI	GRCGYC	2 cut(s)	563, 1455
BsaJI	CCNNGG	2 cut(s)	1268, 1692
BsaWI	WCCGGW	1 cut(s)	1301
BsaXI	ACNNNNNCTCC	2 cut(s)	1708, 1738
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 529, 2067
Bse118I	RCCGGY	1 cut(s)	2086
Bse1I	ACTGG	3 cut(s)	144, 203, 740
Bse3DI	GCAATG	1 cut(s)	1411
BseAI	TCCGGA	1 cut(s)	1301
BseBI	CCWGG	2 cut(s)	434, 1196
BseDI	CCNNGG	2 cut(s)	1268, 1692
BseGI	GGATG	3 cut(s)	1155, 1416, 1608
BseLI	CCNNNNNNNGG	3 cut(s)	439, 529, 2067
BseMI	GCAATG	1 cut(s)	1411
BseMII	CTCAG	2 cut(s)	737, 1377
BseNI	ACTGG	3 cut(s)	144, 203, 740
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	6 cut(s)	21, 322, 678, 1612, 1812, 2029
BshFI	GGCC	7 cut(s)	8, 163, 521, 678, 844, 1206, 1749
BsiSI	CCGG	2 cut(s)	1302, 2087
BslI	CCNNNNNNNGG	3 cut(s)	439, 529, 2067
BsmAI	GTCTC	4 cut(s)	359, 635, 915, 1462
BsmBI	CGTCTC	2 cut(s)	635, 1462
BsnI	GGCC	7 cut(s)	8, 163, 521, 678, 844, 1206, 1749
Bsp120I	GGGCCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp13I	TCCGGA	1 cut(s)	1301
Bsp143I	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
Bsp1720I	GCTNAGC	1 cut(s)	1386
BspACI	CCGC	2 cut(s)	1746, 1828
BspANI	GGCC	7 cut(s)	8, 163, 521, 678, 844, 1206, 1749
BspCNI	CTCAG	2 cut(s)	736, 1378
BspEI	TCCGGA	1 cut(s)	1301
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	4 cut(s)	163, 677, 713, 1690
BspMAI	CTGCAG	2 cut(s)	340, 1311
BspMI	ACCTGC	2 cut(s)	1264, 1693
BspPI	GGATC	4 cut(s)	214, 706, 719, 2052
BspQI	GCTCTTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	1411
BsrFI	RCCGGY	1 cut(s)	2086
BsrI	ACTGG	3 cut(s)	144, 203, 740
BssAI	RCCGGY	1 cut(s)	2086
BssECI	CCNNGG	2 cut(s)	1268, 1692
BssMI	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
BssNI	GRCGYC	2 cut(s)	563, 1455
BssT1I	CCWWGG	2 cut(s)	1268, 1692
Bst2UI	CCWGG	2 cut(s)	434, 1196
Bst4CI	ACNGT	4 cut(s)	835, 1111, 1424, 1932
Bst6I	CTCTTC	4 cut(s)	24, 307, 495, 1577
BstACI	GRCGYC	2 cut(s)	563, 1455
BstAPI	GCANNNNNTGC	1 cut(s)	1708
BstBAI	YACGTR	1 cut(s)	1055
BstDEI	CTNAG	2 cut(s)	723, 1386
BstEII	GGTNACC	1 cut(s)	1480
BstENI	CCTNNNNNAGG	2 cut(s)	527, 2065
BstF5I	GGATG	3 cut(s)	1155, 1416, 1608
BstHHI	GCGC	1 cut(s)	1074
BstKTI	GATC	8 cut(s)	209, 714, 787, 1513, 1775, 1849, 1944, 2060
BstMAI	GTCTC	4 cut(s)	359, 635, 915, 1462
BstMBI	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 185, 675, 755, 1362, 1670, 1708, 1822
BstNI	CCWGG	2 cut(s)	434, 1196
BstNSI	RCATGY	1 cut(s)	1267
BstPI	GGTNACC	1 cut(s)	1480
BstSCI	CCNGG	2 cut(s)	432, 1194
BstSFI	CTRYAG	3 cut(s)	336, 1110, 1307
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	6 cut(s)	21, 322, 678, 1612, 1812, 2029
BstV2I	GAAGAC	3 cut(s)	201, 867, 1279
BstX2I	RGATCY	2 cut(s)	711, 2057
BstXI	CCANNNNNNTGG	2 cut(s)	623, 1202
BstYI	RGATCY	2 cut(s)	711, 2057
BsuRI	GGCC	7 cut(s)	8, 163, 521, 678, 844, 1206, 1749
BtsCI	GGATG	3 cut(s)	1155, 1416, 1608
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	410, 747, 1107
BveI	ACCTGC	2 cut(s)	1264, 1693
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	1074
Cfr10I	RCCGGY	1 cut(s)	2086
Cfr13I	GGNCC	7 cut(s)	7, 161, 162, 430, 520, 676, 1688
CseI	GACGC	2 cut(s)	52, 571
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	863, 1328
CviQI	GTAC	2 cut(s)	863, 1328
DdeI	CTNAG	2 cut(s)	723, 1386
DpnI	GATC	8 cut(s)	208, 713, 786, 1512, 1774, 1848, 1943, 2059
DpnII	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
DrdI	GACNNNNNNGTC	1 cut(s)	1356
DseDI	GACNNNNNNGTC	1 cut(s)	1356
EaeI	YGGCCR	2 cut(s)	1204, 1747
Eam1104I	CTCTTC	4 cut(s)	24, 307, 495, 1577
EarI	CTCTTC	4 cut(s)	24, 307, 495, 1577
Eco130I	CCWWGG	2 cut(s)	1268, 1692
Eco24I	GRGCYC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	430, 1688
Eco57I	CTGAAG	2 cut(s)	1601, 1827
Eco72I	CACGTG	1 cut(s)	1055
Eco91I	GGTNACC	1 cut(s)	1480
EcoNI	CCTNNNNNAGG	2 cut(s)	527, 2065
EcoO109I	RGGNCCY	3 cut(s)	162, 520, 1688
EcoO65I	GGTNACC	1 cut(s)	1480
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	432, 1194
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	2 cut(s)	1268, 1692
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	1268, 1692
Esp3I	CGTCTC	2 cut(s)	635, 1462
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FauNDI	CATATG	2 cut(s)	471, 1068
FbaI	TGATCA	1 cut(s)	1510
FblI	GTMKAC	2 cut(s)	1452, 1880
Fnu4HI	GCNGC	7 cut(s)	35, 336, 667, 1601, 1747, 1826, 2018
FokI	GGATG	3 cut(s)	1142, 1423, 1595
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	7 cut(s)	35, 336, 667, 1601, 1747, 1826, 2018
FspBI	CTAG	4 cut(s)	323, 966, 1269, 1743
GlaI	GCGC	1 cut(s)	1073
GluI	GCNGC	7 cut(s)	35, 336, 667, 1601, 1747, 1826, 2018
GsuI	CTGGAG	1 cut(s)	1096
HaeIII	GGCC	7 cut(s)	8, 163, 521, 678, 844, 1206, 1749
HapII	CCGG	2 cut(s)	1302, 2087
HgaI	GACGC	2 cut(s)	52, 571
HhaI	GCGC	1 cut(s)	1074
Hin1I	GRCGYC	2 cut(s)	563, 1455
Hin6I	GCGC	1 cut(s)	1072
HinP1I	GCGC	1 cut(s)	1072
HincII	GTYRAC	2 cut(s)	477, 838
HindII	GTYRAC	2 cut(s)	477, 838
HindIII	AAGCTT	4 cut(s)	144, 450, 1472, 1730
HpaII	CCGG	2 cut(s)	1302, 2087
HphI	GGTGA	2 cut(s)	448, 545
Hpy166II	GTNNAC	5 cut(s)	477, 838, 980, 1453, 1881
Hpy188I	TCNGA	7 cut(s)	124, 169, 789, 934, 1515, 1576, 1846
Hpy8I	GTNNAC	5 cut(s)	477, 838, 980, 1453, 1881
Hpy99I	CGWCG	2 cut(s)	1362, 1823
HpyAV	CCTTC	2 cut(s)	530, 1825
HpyCH4III	ACNGT	4 cut(s)	835, 1111, 1424, 1932
HpyCH4IV	ACGT	5 cut(s)	42, 1044, 1054, 1455, 1783
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 185, 675, 755, 1362, 1670, 1708, 1822
HpyF3I	CTNAG	2 cut(s)	723, 1386
HpySE526I	ACGT	5 cut(s)	42, 1044, 1054, 1455, 1783
Hsp92I	GRCGYC	2 cut(s)	563, 1455
HspAI	GCGC	1 cut(s)	1072
Kpn2I	TCCGGA	1 cut(s)	1301
Ksp22I	TGATCA	1 cut(s)	1510
Kzo9I	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	804, 1077
Lsp1109I	GCAGC	6 cut(s)	21, 322, 678, 1612, 1812, 2029
LweI	GCATC	4 cut(s)	267, 786, 957, 1999
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	4 cut(s)	323, 966, 1269, 1743
MaeII	ACGT	5 cut(s)	42, 1044, 1054, 1455, 1783
MaeIII	GTNAC	7 cut(s)	155, 359, 559, 1415, 1480, 1527, 1678
MalI	GATC	8 cut(s)	208, 713, 786, 1512, 1774, 1848, 1943, 2059
MboI	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	2 cut(s)	711, 2057
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	8 cut(s)	54, 639, 879, 911, 1532, 1545, 1643, 1918
MlyI	GAGTC	4 cut(s)	361, 715, 917, 1218
MroI	TCCGGA	1 cut(s)	1301
MroXI	GAANNNNTTC	3 cut(s)	915, 1062, 1644
MseI	TTAA	6 cut(s)	294, 509, 1443, 1548, 1728, 1779
MslI	CAYNNNNRTG	2 cut(s)	214, 1029
MspI	CCGG	2 cut(s)	1302, 2087
MspR9I	CCNGG	2 cut(s)	434, 1196
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	2 cut(s)	434, 1196
MwoI	GCNNNNNNNGC	8 cut(s)	14, 185, 675, 755, 1362, 1670, 1708, 1822
NdeI	CATATG	2 cut(s)	471, 1068
NdeII	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
NlaIV	GGNNCC	4 cut(s)	163, 677, 713, 1690
NmuCI	GTSAC	3 cut(s)	155, 559, 1415
NspI	RCATGY	1 cut(s)	1267
PagI	TCATGA	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	3 cut(s)	915, 1062, 1644
PfeI	GAWTC	8 cut(s)	221, 424, 460, 941, 1128, 1312, 1980, 2114
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	7 cut(s)	36, 337, 668, 1602, 1748, 1827, 2019
PleI	GAGTC	4 cut(s)	360, 715, 917, 1218
PmaCI	CACGTG	1 cut(s)	1055
PmlI	CACGTG	1 cut(s)	1055
PpsI	GAGTC	4 cut(s)	360, 715, 917, 1218
Ppu21I	YACGTR	1 cut(s)	1055
PpuMI	RGGWCCY	1 cut(s)	1688
PshBI	ATTAAT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	1688
Psp6I	CCWGG	2 cut(s)	432, 1194
PspCI	CACGTG	1 cut(s)	1055
PspEI	GGTNACC	1 cut(s)	1480
PspGI	CCWGG	2 cut(s)	432, 1194
PspN4I	GGNNCC	4 cut(s)	163, 677, 713, 1690
PspOMI	GGGCCC	1 cut(s)	161
PspPI	GGNCC	7 cut(s)	7, 161, 162, 430, 520, 676, 1688
PspPPI	RGGWCCY	1 cut(s)	1688
PstI	CTGCAG	2 cut(s)	340, 1311
PsuI	RGATCY	2 cut(s)	711, 2057
RsaI	GTAC	2 cut(s)	864, 1329
RsaNI	GTAC	2 cut(s)	863, 1328
RseI	CAYNNNNRTG	2 cut(s)	214, 1029
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	6 cut(s)	294, 509, 1443, 1548, 1728, 1779
SatI	GCNGC	7 cut(s)	35, 336, 667, 1601, 1747, 1826, 2018
Sau3AI	GATC	8 cut(s)	206, 711, 784, 1510, 1772, 1846, 1941, 2057
Sau96I	GGNCC	7 cut(s)	7, 161, 162, 430, 520, 676, 1688
SchI	GAGTC	4 cut(s)	361, 715, 917, 1218
ScrFI	CCNGG	2 cut(s)	434, 1196
SduI	GDGCHC	1 cut(s)	165
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	4 cut(s)	267, 786, 957, 1999
SfcI	CTRYAG	3 cut(s)	336, 1110, 1307
SinI	GGWCC	2 cut(s)	430, 1688
SmiMI	CAYNNNNRTG	2 cut(s)	214, 1029
SmlI	CTYRAG	3 cut(s)	225, 716, 1168
SmoI	CTYRAG	3 cut(s)	225, 716, 1168
Sse9I	AATT	8 cut(s)	54, 639, 879, 911, 1532, 1545, 1643, 1918
SsiI	CCGC	2 cut(s)	1746, 1828
SspMI	CTAG	4 cut(s)	323, 966, 1269, 1743
StyD4I	CCNGG	2 cut(s)	432, 1194
StyI	CCWWGG	2 cut(s)	1268, 1692
TaaI	ACNGT	4 cut(s)	835, 1111, 1424, 1932
TaiI	ACGT	5 cut(s)	45, 1047, 1057, 1458, 1786
TaqI	TCGA	4 cut(s)	525, 688, 919, 1818
TasI	AATT	8 cut(s)	54, 639, 879, 911, 1532, 1545, 1643, 1918
TauI	GCSGC	1 cut(s)	1749
TfiI	GAWTC	8 cut(s)	221, 424, 460, 941, 1128, 1312, 1980, 2114
Tru1I	TTAA	6 cut(s)	294, 509, 1443, 1548, 1728, 1779
Tru9I	TTAA	6 cut(s)	294, 509, 1443, 1548, 1728, 1779
TscAI	CASTG	3 cut(s)	417, 747, 1114
TseFI	GTSAC	3 cut(s)	155, 559, 1415
TseI	GCWGC	6 cut(s)	34, 335, 666, 1600, 1825, 2017
Tsp45I	GTSAC	3 cut(s)	155, 559, 1415
TspDTI	ATGAA	7 cut(s)	126, 904, 915, 1055, 1308, 1788, 1940
TspGWI	ACGGA	1 cut(s)	1986
TspRI	CASTG	3 cut(s)	417, 747, 1114
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	430, 1688
VspI	ATTAAT	1 cut(s)	294
XagI	CCTNNNNNAGG	2 cut(s)	527, 2065
XapI	RAATTY	3 cut(s)	911, 1643, 1918
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	1 cut(s)	1267
XmaJI	CCTAGG	1 cut(s)	1268
XmiI	GTMKAC	2 cut(s)	1452, 1880
XmnI	GAANNNNTTC	3 cut(s)	915, 1062, 1644
XspI	CTAG	4 cut(s)	323, 966, 1269, 1743
ZraI	GACGTC	1 cut(s)	1456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.