MD00G1101300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0018492
Physical Location & Seq
Forward (+)
21463136 .. 21463799
664 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1101300.v1.1.491

Sequence Viewer

Length: 177 bp
ATGCTCAGTGGTGTCGAAGAGCTTGCGGATGCTGTCAAAGTCACCATGGGACCTAAGGTTATCTACCTGATTCCACTACAACTCATTCTAGTCGGTCATTTACCTTTCACCTTATATAAAACCTTCACATTGACTTTGTATAAGTGTGCTCTATGCGCATTAGGTGTAATCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.38

Weight (kDa)

8.71

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 157
AciI CCGC 1 cut(s) 26
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 34, 100
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BfaI CTAG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 45
Bse21I CCTNAGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 5, 54
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 1 cut(s) 46
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
DdeI CTNAG 2 cut(s) 5, 54
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 5 cut(s) 47, 115, 117, 141, 154
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 41
FspAI RTGCGCAY 1 cut(s) 157
FspBI CTAG 1 cut(s) 89
FspI TGCGCA 1 cut(s) 157
GlaI GCGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 70
HphI GGTGA 2 cut(s) 34, 100
Hpy188I TCNGA 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 5, 54
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 156
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 1 cut(s) 80
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 40
NsbI TGCGCA 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 151
SetI ASST 8 cut(s) 24, 55, 60, 69, 106, 113, 125, 166
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 4 cut(s) 35, 58, 79, 101
SinI GGWCC 1 cut(s) 50
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 83
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 50
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.