Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7994504.1

Orthogroup ID

OG0018492

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 255

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7994504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 212 bp

atgaagaagcagatggtggtgcccattttctacaaagtagatccctcagatattcgtaaattgaagaaagagtttggaaaagcttttgccaaacatgaggaaaatgcttatgctgaccagaaagagttggagacctggaatactgcactaacaagaatcgctgatcttagtgatctatcatttctatctggctgggattcgcgacagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

70

Amino Acids

8.23

Weight (kDa)

7.97

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018492)

Species	Orthologous Gene IDs
malus_domestica	MD00G1101300.v1.1 MD15G1240100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0326891 RchiOBHm_Chr2g0151951 RchiOBHm_Chr7g0196721
rosa_multiflora	Rmu_co7994504.1_g000001 Rmu_sc0004501.1_g000013 Rmu_sc0014538.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007550
rosa_rugosa	Rorug07G0161400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	202
AclWI	GGATC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	19
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	40, 163, 172
Bsp68I	TCGCGA	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	125
BssMI	GATC	3 cut(s)	40, 163, 172
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	46, 167
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	43, 166, 175
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	40, 163, 172
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtuMI	TCGCGA	1 cut(s)	202
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	2 cut(s)	83, 192
CviKI_1	RGCY	2 cut(s)	83, 192
DdeI	CTNAG	2 cut(s)	46, 167
DpnI	GATC	3 cut(s)	42, 165, 174
DpnII	GATC	3 cut(s)	40, 163, 172
Eco31I	GGTCTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	96, 111, 210
FatI	CATG	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	2 cut(s)	156, 197
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	46, 167
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	40, 163, 172
LpnPI	CCDG	5 cut(s)	121, 131, 148, 174, 178
MalI	GATC	3 cut(s)	42, 165, 174
MboI	GATC	3 cut(s)	40, 163, 172
MboII	GAAGA	2 cut(s)	16, 76
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	2 cut(s)	55, 91
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	202
NdeII	GATC	3 cut(s)	40, 163, 172
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	21
NruI	TCGCGA	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	156, 197
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	40
RruI	TCGCGA	1 cut(s)	202
Sau3AI	GATC	3 cut(s)	40, 163, 172
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	2 cut(s)	85, 137
SgeI	CNNG	7 cut(s)	107, 130, 147, 148, 165, 201, 205
Sse9I	AATT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	207
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	156, 197
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.