Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018492

Physical Location & Seq

Genomic Coordinates Reverse (-)

9674542 .. 9677652

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGATATCAAGAAGCAGATGGTGGTGCCCATTTTCTACAAAGTAGAGCCCTCCGATATTCGTAAATTGAAGAAAGAGTTTGGAAAAGCTTTTGCCAAACTTGAAGAAAATGCTTATGCTGACCAGAAAGAGTTGGAGACCTGGAATACTGCACTAACAAGAATCGCTGATCTTAGTGATCTATCTGGCTGGGATTCGCGACAGTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

70

Amino Acids

8.21

Weight (kDa)

6.22

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	4 - 68	4.6e-10	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018492)

Species	Orthologous Gene IDs
malus_domestica	MD00G1101300.v1.1 MD15G1240100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0326891 RchiOBHm_Chr2g0151951 RchiOBHm_Chr7g0196721
rosa_multiflora	Rmu_co7994504.1_g000001 Rmu_sc0004501.1_g000013 Rmu_sc0014538.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007550
rosa_rugosa	Rorug07G0161400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	70, 104
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	51
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	30, 51
Bsp143I	GATC	2 cut(s)	169, 178
Bsp68I	TCGCGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	131
BssMI	GATC	2 cut(s)	169, 178
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	172, 181
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	169, 178
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	30
BstUI	CGCG	1 cut(s)	199
BtuMI	TCGCGA	1 cut(s)	199
CviJI	RGCY	3 cut(s)	49, 89, 189
CviKI_1	RGCY	3 cut(s)	49, 89, 189
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	171, 180
DpnII	GATC	2 cut(s)	169, 178
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	51
FaiI	YATR	2 cut(s)	117, 207
FriOI	GRGCYC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	2 cut(s)	162, 194
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	10, 198
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	169, 178
LpnPI	CCDG	5 cut(s)	127, 137, 154, 171, 175
MalI	GATC	2 cut(s)	171, 180
MboI	GATC	2 cut(s)	169, 178
MboII	GAAGA	2 cut(s)	82, 116
MhlI	GDGCHC	2 cut(s)	30, 51
MluCI	AATT	2 cut(s)	65, 208
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	199
NdeII	GATC	2 cut(s)	169, 178
NlaIV	GGNNCC	1 cut(s)	27
NruI	TCGCGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	162, 194
Psp6I	CCWGG	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	27
RruI	TCGCGA	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	169, 178
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	30, 51
SetI	ASST	2 cut(s)	91, 143
SgeI	CNNG	8 cut(s)	22, 113, 136, 153, 154, 171, 198, 202
Sse9I	AATT	2 cut(s)	65, 208
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	204
TasI	AATT	2 cut(s)	65, 208
TfiI	GAWTC	2 cut(s)	162, 194
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.