MD15G1240100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018492
Physical Location & Seq
Forward (+)
19759287 .. 19766326
7040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1240100.v1.1.491

Sequence Viewer

Length: 159 bp
ATGCTCAATGGTGTCGAAGAGCTTGCGGATGCTGTTAAAGTCACCATGGGACCTAAGTTGGTAGCCACAAATCAACTGACTCAACTTTATATCAATATTGGAGCCTTAAAAGTGATTCATTCAAGTTCCAATTTGAACTATTGGAAGATGTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.8

Weight (kDa)

8.12

Isoelectric Point (pI)

17.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 123, 136
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 51, 103
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 51, 103
BspQI GCTCTTC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 22, 65, 104
CviKI_1 RGCY 3 cut(s) 22, 65, 104
DdeI CTNAG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 90, 155
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 41
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 79, 115
HphI GGTGA 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 101
LweI GCATC 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 2 cut(s) 29, 157
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 73
MseI TTAA 2 cut(s) 36, 107
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 51, 103
NmuCI GTSAC 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 115
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 51, 103
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 36, 107
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 73
SetI ASST 2 cut(s) 24, 55
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 3 cut(s) 35, 58, 135
SinI GGWCC 1 cut(s) 50
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 97
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 36, 107
Tru9I TTAA 2 cut(s) 36, 107
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.