Rorug07G0161400
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018492
Physical Location & Seq
Reverse (-)
12924188 .. 12929027
4840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0161400.1

Sequence Viewer

Length: 1206 bp
ATGGGGTTACTTAGCAGGACAGGGCCATCTGGGTTCTCAGCCTCTTCCACAGCAGAGGAAGTTACTCAAGGGATTGATGGAACTGGTCTTACCGCCATCGTTACAGGAACCACAAGCGGTCTTGGTTTAGAGACATCGCACGTTCTTGCATTGCGTGGTGTCCATGTAGTTATGGCAGTAAGGAACACAAATGCAGGGGAAAATGTCAAAGAAGCAATCCTACGTTCCAGTTCTACGTACGATTTACCAATTCACGTCAAGAAAGGACCATCTGGATTTTCTGCTTTTTCGACAGCAGAGGAGGTTACTCATGGGATTGACGGAACTGGTCTTACTGCCGTAGTCACAGGAGCTTCAAGTGGTATTGGCGTAGAGACATCACATGTCCTTGCTTTGCGTGGTGTCCATGTAGTTATGGCAGTAAGGAACATTGATGCTGGGAATAATGTTAAAGAAGCAATACTTAAGGACATTCCCACTGCTAAAATTGATATCATGGAATTAGACCTCAGCTCTTTAGCATCTGTAACAAAATTTGCAGCGGACTATAATTCTAAAGGCCTTCCACTGAACATCCTTATTAACAATGCAGGGGTTATGGCAACTCCATTCAAGCTTTCTCAAGATAACATAGAACTTCAGTTTGCTACGAACCATTTAGGTCATTTTCTCCTCACAAATCTTCTCTTGGAGACAATGAAACACACATCGCGAGAGAGCAGAATAGAAGGAAGAGTTGTTAATGTAGCATCTTTAGGCCATAAATTTGGGTATCCGGAAGGAATTGTTTTCGATGAAATCAATGATGAATCAAGGTACAACAAATATCGTGCATATAACCAATCCAAGCTTGCTAACATATTACATGCTAATGAGCTTGCAAGGCGTTTAAAGGAAGAAGGTGTGGAGATAACTGCTAATTCTCTTCATCCCGGAGATATTTACACAAATCTTTTACGCAATGTTCATAGCTTTTTTCAATGTTTTTTTAAGACGCTGTCCCTGCTGGGTATATTTATGTCAAAAACCGTTGAGCAGGGAGCGGCGACAACATGCTTTGTGTCACTTCATCCACAAGTAAAGGGAGTAAGCGGGGAATACTTTTCAGGGTGCAACATCACCAAACCGAGCTCTCAGGCAAAAGATGGAGATGTGGCCAAGAAACTCTGGGAATTTAGCTTGAGTTTGACCGATCGAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0022626 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042788 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

401

Amino Acids

43.13

Weight (kDa)

6.71

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 112 - 263 2.2e-24 short chain dehydrogenase
adh_short_C2 PF13561 117 - 332 1.7e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1043
AccII CGCG 1 cut(s) 712
AccIII TCCGGA 1 cut(s) 775
AciI CCGC 5 cut(s) 93, 117, 542, 1043, 1092
AcoI YGGCCR 1 cut(s) 1155
AcsI RAATTY 3 cut(s) 533, 764, 1172
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 3 cut(s) 239, 818, 1202
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 3 cut(s) 357, 613, 980
AjiI CACGTC 1 cut(s) 256
AluBI AGCT 8 cut(s) 353, 513, 616, 850, 877, 972, 1131, 1179
AluI AGCT 8 cut(s) 353, 513, 616, 850, 877, 972, 1131, 1179
Alw21I GWGCWC 1 cut(s) 1133
Alw26I GTCTC 3 cut(s) 125, 368, 686
Aor13HI TCCGGA 1 cut(s) 775
AoxI GGCC 4 cut(s) 23, 559, 757, 1155
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 3 cut(s) 533, 764, 1172
AspS9I GGNCC 2 cut(s) 23, 266
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 1 cut(s) 1111
AvaII GGWCC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 1157
BanII GRGCYC 1 cut(s) 1133
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
Bbv12I GWGCWC 1 cut(s) 1133
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 551
BccI CCATC 5 cut(s) 34, 71, 104, 277, 1139
BceAI ACGGC 1 cut(s) 323
BciVI GTATCC 1 cut(s) 783
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 3 cut(s) 125, 368, 686
BfrI CTTAAG 1 cut(s) 464
BfuI GTATCC 1 cut(s) 783
BisI GCNGC 2 cut(s) 540, 1044
BlsI GCNGC 2 cut(s) 541, 1045
BmcAI AGTACT 1 cut(s) 1202
Bme1390I CCNGG 1 cut(s) 933
Bme18I GGWCC 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 23, 266
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 3 cut(s) 424, 530, 758
Bpu10I CCTNAGC 1 cut(s) 509
BpuEI CTTGAG 3 cut(s) 51, 606, 1201
BpuMI CCSGG 1 cut(s) 933
BsaAI YACGTR 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 775
Bse1I ACTGG 3 cut(s) 88, 228, 331
Bse3DI GCAATG 2 cut(s) 149, 967
BseAI TCCGGA 1 cut(s) 775
BseGI GGATG 3 cut(s) 573, 928, 1069
BseMI GCAATG 2 cut(s) 149, 967
BseMII CTCAG 3 cut(s) 51, 523, 1148
BseNI ACTGG 3 cut(s) 88, 228, 331
BseRI GAGGAG 2 cut(s) 314, 662
BseXI GCAGC 1 cut(s) 551
BseYI CCCAGC 2 cut(s) 437, 1006
Bsh1236I CGCG 1 cut(s) 712
Bsh1285I CGRYCG 1 cut(s) 1195
BshFI GGCC 4 cut(s) 25, 561, 759, 1157
BsiEI CGRYCG 1 cut(s) 1195
BsiHKAI GWGCWC 1 cut(s) 1133
BsiSI CCGG 2 cut(s) 776, 933
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 985
BsmAI GTCTC 3 cut(s) 125, 368, 686
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 4 cut(s) 25, 561, 759, 1157
Bsp1286I GDGCHC 1 cut(s) 1133
Bsp13I TCCGGA 1 cut(s) 775
Bsp143I GATC 1 cut(s) 1192
Bsp68I TCGCGA 1 cut(s) 712
BspACI CCGC 5 cut(s) 93, 117, 542, 1043, 1092
BspANI GGCC 4 cut(s) 25, 561, 759, 1157
BspCNI CTCAG 3 cut(s) 50, 522, 1147
BspEI TCCGGA 1 cut(s) 775
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 464
BsrBI CCGCTC 1 cut(s) 1043
BsrDI GCAATG 2 cut(s) 149, 967
BsrI ACTGG 3 cut(s) 88, 228, 331
BssMI GATC 1 cut(s) 1192
Bst4CI ACNGT 1 cut(s) 1030
Bst6I CTCTTC 3 cut(s) 49, 727, 930
BstAFI CTTAAG 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 852, 879
BstDEI CTNAG 4 cut(s) 11, 37, 509, 1134
BstF5I GGATG 3 cut(s) 573, 928, 1069
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 1 cut(s) 1195
BstMAI GTCTC 3 cut(s) 125, 368, 686
BstMBI GATC 1 cut(s) 1192
BstMCI CGRYCG 1 cut(s) 1195
BstMWI GCNNNNNNNGC 2 cut(s) 883, 1003
BstNSI RCATGY 3 cut(s) 386, 869, 1056
BstSCI CCNGG 1 cut(s) 931
BstSNI TACGTA 1 cut(s) 237
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 1 cut(s) 551
BstXI CCANNNNNNTGG 1 cut(s) 767
BsuI GTATCC 1 cut(s) 783
BsuRI GGCC 4 cut(s) 25, 561, 759, 1157
BtgZI GCGATG 2 cut(s) 120, 693
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 573, 928, 1069
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 477, 566
BtuMI TCGCGA 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 852, 879
Cfr13I GGNCC 2 cut(s) 23, 266
CseI GACGC 1 cut(s) 1003
Csp6I GTAC 3 cut(s) 238, 817, 1201
CviAII CATG 7 cut(s) 164, 311, 383, 407, 496, 866, 1053
CviQI GTAC 3 cut(s) 238, 817, 1201
DdeI CTNAG 4 cut(s) 11, 37, 509, 1134
DpnI GATC 1 cut(s) 1194
DpnII GATC 1 cut(s) 1192
DraI TTTAAA 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 1155
Eam1104I CTCTTC 3 cut(s) 49, 727, 930
EarI CTCTTC 3 cut(s) 49, 727, 930
Ecl136II GAGCTC 1 cut(s) 1131
Eco105I TACGTA 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 1133
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 1131
Eco57I CTGAAG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 1131
EcoRV GATATC 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 1133
FaeI CATG 7 cut(s) 167, 314, 386, 410, 499, 869, 1056
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 1 cut(s) 985
FatI CATG 7 cut(s) 163, 310, 382, 406, 495, 865, 1052
FauI CCCGC 1 cut(s) 1085
Fnu4HI GCNGC 2 cut(s) 540, 1044
FokI GGATG 3 cut(s) 560, 915, 1056
FriOI GRGCYC 1 cut(s) 1133
Fsp4HI GCNGC 2 cut(s) 540, 1044
GluI GCNGC 2 cut(s) 540, 1044
GsaI CCCAGC 2 cut(s) 441, 1010
HaeIII GGCC 4 cut(s) 25, 561, 759, 1157
HapII CCGG 2 cut(s) 776, 933
HgaI GACGC 1 cut(s) 1003
Hin1II CATG 7 cut(s) 167, 314, 386, 410, 499, 869, 1056
HindIII AAGCTT 2 cut(s) 614, 848
HinfI GANTC 1 cut(s) 809
HpaII CCGG 2 cut(s) 776, 933
HphI GGTGA 1 cut(s) 1111
Hpy188III TCNNGA 5 cut(s) 259, 273, 623, 711, 776
HpyAV CCTTC 4 cut(s) 572, 722, 773, 893
HpyCH4III ACNGT 1 cut(s) 1030
HpyCH4IV ACGT 4 cut(s) 141, 223, 236, 255
HpyCH4V TGCA 7 cut(s) 149, 194, 539, 590, 833, 881, 1113
HpyF10VI GCNNNNNNNGC 2 cut(s) 883, 1003
HpyF3I CTNAG 4 cut(s) 11, 37, 509, 1134
HpySE526I ACGT 4 cut(s) 141, 223, 236, 255
Hsp92II CATG 7 cut(s) 167, 314, 386, 410, 499, 869, 1056
Kpn2I TCCGGA 1 cut(s) 775
Kzo9I GATC 1 cut(s) 1192
LmnI GCTCC 2 cut(s) 350, 1040
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 3 cut(s) 424, 530, 758
MaeII ACGT 4 cut(s) 141, 223, 236, 255
MaeIII GTNAC 7 cut(s) 6, 61, 100, 304, 343, 526, 1062
MalI GATC 1 cut(s) 1194
MbiI CCGCTC 1 cut(s) 1043
MboI GATC 1 cut(s) 1192
MboII GAAGA 5 cut(s) 36, 674, 744, 908, 917
MhlI GDGCHC 1 cut(s) 1133
MlsI TGGCCA 1 cut(s) 1157
MluCI AATT 9 cut(s) 249, 486, 500, 533, 550, 764, 783, 919, 1172
MluNI TGGCCA 1 cut(s) 1157
MnlI CCTC 6 cut(s) 49, 52, 292, 295, 518, 683
Mox20I TGGCCA 1 cut(s) 1157
MroI TCCGGA 1 cut(s) 775
MscI TGGCCA 1 cut(s) 1157
MseI TTAA 6 cut(s) 450, 465, 582, 741, 890, 990
MslI CAYNNNNRTG 1 cut(s) 870
Msp20I TGGCCA 1 cut(s) 1157
MspA1I CMGCKG 1 cut(s) 542
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 776, 933
MspR9I CCNGG 1 cut(s) 933
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 2 cut(s) 883, 1003
NciI CCSGG 1 cut(s) 933
NdeII GATC 1 cut(s) 1192
NlaIII CATG 7 cut(s) 167, 314, 386, 410, 499, 869, 1056
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 343, 1062
NruI TCGCGA 1 cut(s) 712
NspI RCATGY 3 cut(s) 386, 869, 1056
PceI AGGCCT 1 cut(s) 561
PciI ACATGT 1 cut(s) 382
PfeI GAWTC 1 cut(s) 809
Pfl23II CGTACG 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 997
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 2 cut(s) 541, 1045
Ple19I CGATCG 1 cut(s) 1195
Ppu21I YACGTR 1 cut(s) 237
PscI ACATGT 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 1133
PspFI CCCAGC 2 cut(s) 437, 1006
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 23, 266
PsrI GAACNNNNNNTAC 4 cut(s) 73, 105, 316, 348
PsyI GACNNNGTC 1 cut(s) 997
PvuI CGATCG 1 cut(s) 1195
RruI TCGCGA 1 cut(s) 712
RsaI GTAC 3 cut(s) 239, 818, 1202
RsaNI GTAC 3 cut(s) 238, 817, 1201
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 1133
SaqAI TTAA 6 cut(s) 450, 465, 582, 741, 890, 990
SatI GCNGC 2 cut(s) 540, 1044
Sau3AI GATC 1 cut(s) 1192
Sau96I GGNCC 2 cut(s) 23, 266
ScaI AGTACT 1 cut(s) 1202
ScrFI CCNGG 1 cut(s) 933
SduI GDGCHC 1 cut(s) 1133
SfaNI GCATC 3 cut(s) 424, 530, 758
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 4 cut(s) 66, 464, 621, 1180
SmoI CTYRAG 4 cut(s) 66, 464, 621, 1180
SnaBI TACGTA 1 cut(s) 237
Sse9I AATT 9 cut(s) 249, 486, 500, 533, 550, 764, 783, 919, 1172
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 5 cut(s) 93, 117, 542, 1043, 1092
SstI GAGCTC 1 cut(s) 1133
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 931
TaaI ACNGT 1 cut(s) 1030
TaiI ACGT 4 cut(s) 144, 226, 239, 258
TaqI TCGA 3 cut(s) 290, 792, 1195
TaqII GACCGA 1 cut(s) 1205
TasI AATT 9 cut(s) 249, 486, 500, 533, 550, 764, 783, 919, 1172
TatI WGTACW 1 cut(s) 1200
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 6 cut(s) 450, 465, 582, 741, 890, 990
Tru9I TTAA 6 cut(s) 450, 465, 582, 741, 890, 990
TscAI CASTG 2 cut(s) 484, 573
TseFI GTSAC 2 cut(s) 343, 1062
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 343, 1062
TspDTI ATGAA 6 cut(s) 713, 810, 822, 917, 956, 1058
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 484, 573
Tth111I GACNNNGTC 1 cut(s) 997
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 3 cut(s) 533, 764, 1172
XceI RCATGY 3 cut(s) 386, 869, 1056
ZrmI AGTACT 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.