Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004501.1

Orthogroup ID

OG0018492

Physical Location & Seq

Genomic Coordinates Forward (+)

69020 .. 71171

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004501.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgaagaagcagatggtggtgcccattttctacaaagtagatccctcagacattcgtaaattgaagaaagagtttggaaaagcttttgccaaacatgaggaaaatgcttatgctgaccagaaagagttggagacctggaatactgcactaacaagaatcgctgatcttagtgatctatcatttctatctggctgggattcgcgacagtataacagaggtcagagacattcaaccactgctgatataagaactacttatgtacccatatcggccgattggggtgtggaagagtttgctgatgctgttaaagtcacagtggacaaaaaggacgcaattgttctggagcaaagctttggagctcctaaagtgacaaaggatggtgtcactatagcaaagagcattgagttcagaattacatgttcaaagtgcttgagcttccacatgaagaagaaacacagatcaagttggcttctgataggggatacaagtcaagtggaatggcttcctgagaaagatattgaggttgaggttactgaccatactatgcccgagtcattcatacttgatgaggtaaggcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

193

Amino Acids

22.17

Weight (kDa)

6.32

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018492)

Species	Orthologous Gene IDs
malus_domestica	MD00G1101300.v1.1 MD15G1240100.v1.1
rosa_chinensis	RchiOBHm_Chr1g0326891 RchiOBHm_Chr2g0151951 RchiOBHm_Chr7g0196721
rosa_multiflora	Rmu_co7994504.1_g000001 Rmu_sc0004501.1_g000013 Rmu_sc0014538.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007550
rosa_rugosa	Rorug07G0161400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	202
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	270
AfaI	GTAC	1 cut(s)	261
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	64, 231, 423
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	4 cut(s)	83, 351, 359, 435
AluI	AGCT	4 cut(s)	83, 351, 359, 435
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	2 cut(s)	125, 217
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	2 cut(s)	7, 371
BciT130I	CCWGG	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	125, 217
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	60, 498
BseSI	GKGCMC	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	125, 217
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	24, 361
Bsp143I	GATC	4 cut(s)	40, 163, 172, 458
Bsp68I	TCGCGA	1 cut(s)	202
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	59, 499
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	125
BssMI	GATC	4 cut(s)	40, 163, 172, 458
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	207, 316
Bst6I	CTCTTC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	46, 167, 507
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	43, 166, 175, 461
BstMAI	GTCTC	2 cut(s)	125, 217
BstMBI	GATC	4 cut(s)	40, 163, 172, 458
BstMCI	CGRYCG	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 321
BtuMI	TCGCGA	1 cut(s)	202
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	260
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	3 cut(s)	95, 417, 442
CviJI	RGCY	8 cut(s)	83, 192, 272, 351, 359, 435, 469, 502
CviKI_1	RGCY	8 cut(s)	83, 192, 272, 351, 359, 435, 469, 502
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	46, 167, 507
DpnI	GATC	4 cut(s)	42, 165, 174, 460
DpnII	GATC	4 cut(s)	40, 163, 172, 458
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	359
EclXI	CGGCCG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	361
FaeI	CATG	3 cut(s)	98, 420, 445
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	3 cut(s)	94, 416, 441
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	361
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	272
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	98, 420, 445
HindIII	AAGCTT	2 cut(s)	81, 349
HinfI	GANTC	3 cut(s)	156, 197, 551
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	49, 222, 410, 474
Hpy188III	TCNNGA	3 cut(s)	201, 341, 506
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	207, 316
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	46, 167, 507
Hsp92II	CATG	3 cut(s)	98, 420, 445
Kzo9I	GATC	4 cut(s)	40, 163, 172, 458
LmnI	GCTCC	3 cut(s)	343, 356, 364
LpnPI	CCDG	7 cut(s)	121, 131, 148, 174, 178, 326, 519
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	4 cut(s)	310, 367, 382, 529
MalI	GATC	4 cut(s)	42, 165, 174, 460
MboI	GATC	4 cut(s)	40, 163, 172, 458
MboII	GAAGA	5 cut(s)	16, 76, 299, 457, 460
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	24, 361
MluCI	AATT	3 cut(s)	59, 333, 411
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	55, 91, 209, 514, 520, 562
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	202
NdeII	GATC	4 cut(s)	40, 163, 172, 458
NlaIII	CATG	3 cut(s)	98, 420, 445
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	3 cut(s)	310, 367, 382
NruI	TCGCGA	1 cut(s)	202
NspI	RCATGY	1 cut(s)	420
PciI	ACATGT	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	156, 197
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	40
RruI	TCGCGA	1 cut(s)	202
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	40, 163, 172, 458
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	24, 361
SetI	ASST	9 cut(s)	85, 137, 220, 353, 361, 437, 525, 531, 573
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	59, 333, 411
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	207, 316
TasI	AATT	3 cut(s)	59, 333, 411
TfiI	GAWTC	2 cut(s)	156, 197
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	241, 321
TseFI	GTSAC	3 cut(s)	310, 367, 382
Tsp45I	GTSAC	3 cut(s)	310, 367, 382
TspDTI	ATGAA	3 cut(s)	17, 458, 547
TspRI	CASTG	2 cut(s)	241, 321
XceI	RCATGY	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.