MD00G1163400.v1.1

oligopeptide transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
36790414 .. 36792587
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1163400.v1.1.491

Sequence Viewer

Length: 1581 bp
ATGCAGTTTTTTCTCATTGCCTTGACAGCAAGCTTTCTCTACTATGCACTCCCCGGCTATCTCTTCTCCATCTTGACGTTCTTCTCATGGGTCTGCTGGGCTTGGCCACACAGTATCACAGCTCAGCAGGTCGGATCAGGTTACAATGGACTTGGTGTTGGTGCCTTCACCCTCGATTGGGCTGGGATTTCTGCTTATCATGGCAGCCCCCTCGTCACGCCATGGACTTCCATTCTCAACGTTGGGGTTGGATTTGTCATCTTCATCTACATCATTGTCCCTCTTTGTTATTGGAAGTTTAACACCTTCGATGCTCAAAAGTTCCCTATATTTTCCAACAAGCTGTTCACTTCTACTGGACATAAATACGAAACTACCAAGATCTTAACACCCCAGTTTGATCTTAATATTGATGCCTATAATAGTTACGGCAAGCTTTATCTTAGCCCCCTTTTCGCTTTGTCCATTGGATCGGGATTTGCAAGATTTTCAGCAACCCTAGTTCATGTGGCACTGTTTCACGGAAGAGCTATTTTGAAGCAAAGCAAATCGGCAATGAAGAACGCGAAAATGGATATACATGAGAAATTGATGAAAAATTACAAACAAGTGCCTGAGTGGTGGTTCCTTGTTTTGTTAGCTGTGAGCGTCGTCCTGTCCCTGGTGATGTCTTTTGTATGGAAAGAAACTGTGCAGCTGCCATGGTGGGGTTTGTTGTTTGCCTTTGTCTTGTCTTTCATCGTTACCCTCCCTGTTGGAGTCATTCAAGCTACCACTAACCAACAACCTGGATTTGATATCATAGCACAATTCATGATTGGGTATATTCTACCAGGAAAACCAATTGCAAACTTGCTTTTCAAAATGTACGGACGAATCAGCACTGTCCACGCTCTTTCTTTTCTGTCTGACCTCAAACTTGGGCACTATATGAAGATTCCACCTCGGTGCATGTACACTGTTCAGCTGGTGGGAACTCTAGTTGCCGGTATTGTGAACCTCGCAGTTGCATGGTGGATGCTGGAAAACATCGAGAACATATGCGATGTTGAATCCCGCAATCCAAACAGCCCATGGACTTGTCCTAAATACAGAGTCACCTTCGATGCTTCTGTTATATGGGGTCTAATTGGACCAAGGCGACTGTTTGGACCCGGAGGATTGTATAGGAACTTGATGTGGCTATTCCTTGTTGGAGCTTTGTTGCCGTTTCCAATTTGTTCAATGAGCAAAATCTTCCCAGACAAGAAATGGATTCCCTTGATCAACATGCCAGTCATCACTTATGGCTTTGCGGGGATGCCGCCTGCAACTCCCACCAACATAGCAAGCTGGCTTATCACCGGAGGTATCTTCAACTACTTCGTGTTCAAATACCACAAGCGTTGGTGGCAGAAATACAACTATGTCCTGTCTGCAGCTTTGGATGCCGGGACAGCTTTCATGGGTGTCCTCCTATTCTTCGCCTTGCAGAATCCGAAGCACGAATTGAAATGGTGGGGGACTGAACTCGATCATTGTCCTCTGGCGACATGCCCCATTGCGCCAGGTATTCACGTTGAAGGATGTCCAGTTTTTTAA

Protein Analysis

527

Amino Acids

59.4

Weight (kDa)

9.28

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 489 4.4e-122 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 566
AciI CCGC 3 cut(s) 1057, 1295, 1304
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 142, 478
AcoI YGGCCR 1 cut(s) 104
AfaI GTAC 2 cut(s) 869, 956
AfiI CCNNNNNNNGG 4 cut(s) 177, 178, 661, 707
AgsI TTSAA 9 cut(s) 538, 767, 862, 1052, 1224, 1357, 1372, 1492, 1562
AjnI CCWGG 4 cut(s) 660, 787, 832, 1546
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AleI CACNNNNGTG 1 cut(s) 946
AlwI GGATC 2 cut(s) 142, 478
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 204, 694, 697, 1418
AspLEI GCGC 1 cut(s) 1546
AspS9I GGNCC 2 cut(s) 1133, 1151
AsuC2I CCSGG 3 cut(s) 54, 1155, 1432
AsuHPI GGTGA 4 cut(s) 160, 676, 1090, 1333
AvaII GGWCC 2 cut(s) 1133, 1151
BaeGI GKGCMC 1 cut(s) 927
BalI TGGCCA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 216, 684, 706, 1430
BccI CCATC 1 cut(s) 77
BceAI ACGGC 2 cut(s) 445, 1192
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 4 cut(s) 662, 789, 834, 1548
BclI TGATCA 1 cut(s) 1263
BcnI CCSGG 3 cut(s) 54, 1155, 1432
BfaI CTAG 2 cut(s) 500, 980
BfmI CTRYAG 1 cut(s) 1416
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 1 cut(s) 381
BisI GCNGC 5 cut(s) 205, 695, 698, 1304, 1419
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 5 cut(s) 206, 696, 699, 1305, 1420
Bme1390I CCNGG 7 cut(s) 54, 662, 789, 834, 1155, 1432, 1548
Bme18I GGWCC 2 cut(s) 1133, 1151
BmgT120I GGNCC 2 cut(s) 1133, 1151
BmiI GGNNCC 3 cut(s) 163, 626, 1153
BmrFI CCNGG 7 cut(s) 54, 662, 789, 834, 1155, 1432, 1548
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 6 cut(s) 301, 403, 1008, 1096, 1290, 1417
BmuI ACTGGG 1 cut(s) 388
Bpu1102I GCTNAGC 1 cut(s) 123
BpuMI CCSGG 3 cut(s) 54, 1155, 1432
BsaJI CCNNGG 7 cut(s) 52, 221, 660, 701, 944, 1073, 1136
BsaWI WCCGGW 1 cut(s) 1343
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 178, 661, 707
Bse118I RCCGGY 1 cut(s) 986
Bse1I ACTGG 4 cut(s) 361, 394, 1274, 1571
Bse3DI GCAATG 3 cut(s) 15, 561, 1539
BseBI CCWGG 4 cut(s) 662, 789, 834, 1548
BseDI CCNNGG 7 cut(s) 52, 221, 660, 701, 944, 1073, 1136
BseGI GGATG 4 cut(s) 1023, 1305, 1432, 1571
BseLI CCNNNNNNNGG 4 cut(s) 177, 178, 661, 707
BseMI GCAATG 3 cut(s) 15, 561, 1539
BseMII CTCAG 2 cut(s) 137, 606
BseNI ACTGG 4 cut(s) 361, 394, 1274, 1571
BseSI GKGCMC 1 cut(s) 927
BseXI GCAGC 4 cut(s) 216, 684, 706, 1430
BseYI CCCAGC 2 cut(s) 96, 182
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 161
BsiSI CCGG 5 cut(s) 54, 987, 1155, 1344, 1431
BslFI GGGAC 4 cut(s) 263, 643, 1447, 1516
BslI CCNNNNNNNGG 4 cut(s) 177, 178, 661, 707
BsmFI GGGAC 4 cut(s) 263, 643, 1447, 1516
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 927
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 3 cut(s) 221, 701, 1073
BspACI CCGC 3 cut(s) 1057, 1295, 1304
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 136, 607
BspFNI CGCG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 3 cut(s) 163, 626, 1153
BspMAI CTGCAG 1 cut(s) 1420
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 2 cut(s) 142, 478
BspQI GCTCTTC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 3 cut(s) 15, 561, 1539
BsrFI RCCGGY 1 cut(s) 986
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 4 cut(s) 361, 394, 1274, 1571
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 7 cut(s) 52, 221, 660, 701, 944, 1073, 1136
BssMI GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
BssT1I CCWWGG 4 cut(s) 221, 701, 1073, 1136
Bst2UI CCWGG 4 cut(s) 662, 789, 834, 1548
Bst4CI ACNGT 6 cut(s) 113, 516, 691, 886, 961, 1146
Bst6I CTCTTC 2 cut(s) 68, 520
BstAUI TGTACA 1 cut(s) 954
BstC8I GCNNGC 5 cut(s) 31, 434, 1308, 1330, 1334
BstDEI CTNAG 3 cut(s) 123, 443, 615
BstDSI CCRYGG 3 cut(s) 221, 701, 1073
BstF5I GGATG 4 cut(s) 1023, 1305, 1432, 1571
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 1 cut(s) 1546
BstKTI GATC 6 cut(s) 137, 384, 403, 473, 1266, 1516
BstMBI GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
BstMWI GCNNNNNNNGC 4 cut(s) 26, 1390, 1427, 1436
BstNI CCWGG 4 cut(s) 662, 789, 834, 1548
BstNSI RCATGY 3 cut(s) 955, 1273, 1536
BstSCI CCNGG 7 cut(s) 52, 660, 787, 832, 1153, 1430, 1546
BstSFI CTRYAG 1 cut(s) 1416
BstSLI GKGCMC 1 cut(s) 927
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 216, 684, 706, 1430
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 3 cut(s) 221, 701, 1073
BtgZI GCGATG 1 cut(s) 1059
BtsCI GGATG 4 cut(s) 1023, 1305, 1432, 1571
BtsIMutI CAGTG 3 cut(s) 512, 882, 957
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 5 cut(s) 31, 434, 1308, 1330, 1334
CciI TCATGA 1 cut(s) 813
CfoI GCGC 1 cut(s) 1546
Cfr10I RCCGGY 1 cut(s) 986
Cfr13I GGNCC 2 cut(s) 1133, 1151
CseI GACGC 1 cut(s) 637
Csp6I GTAC 2 cut(s) 868, 955
CspCI CAANNNNNGTGG 2 cut(s) 1367, 1402
CviQI GTAC 2 cut(s) 868, 955
DdeI CTNAG 3 cut(s) 123, 443, 615
DpnI GATC 6 cut(s) 136, 383, 402, 472, 1265, 1515
DpnII GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 68, 520
EarI CTCTTC 2 cut(s) 68, 520
Eco130I CCWWGG 4 cut(s) 221, 701, 1073, 1136
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 2 cut(s) 1133, 1151
EcoRII CCWGG 4 cut(s) 660, 787, 832, 1546
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 4 cut(s) 221, 701, 1073, 1136
ErhI CCWWGG 4 cut(s) 221, 701, 1073, 1136
FaqI GGGAC 4 cut(s) 263, 643, 1447, 1516
FauI CCCGC 2 cut(s) 1064, 1288
FauNDI CATATG 1 cut(s) 1040
FbaI TGATCA 1 cut(s) 1263
Fnu4HI GCNGC 5 cut(s) 205, 695, 698, 1304, 1419
FokI GGATG 3 cut(s) 1030, 1312, 1439
Fsp4HI GCNGC 5 cut(s) 205, 695, 698, 1304, 1419
FspBI CTAG 2 cut(s) 500, 980
GlaI GCGC 1 cut(s) 1545
GluI GCNGC 5 cut(s) 205, 695, 698, 1304, 1419
GsaI CCCAGC 2 cut(s) 100, 186
HaeIII GGCC 1 cut(s) 106
HapII CCGG 5 cut(s) 54, 987, 1155, 1344, 1431
HgaI GACGC 1 cut(s) 637
HhaI GCGC 1 cut(s) 1546
Hin6I GCGC 1 cut(s) 1544
HinP1I GCGC 1 cut(s) 1544
HindIII AAGCTT 2 cut(s) 31, 434
HinfI GANTC 7 cut(s) 759, 876, 937, 1052, 1095, 1255, 1474
HpaII CCGG 5 cut(s) 54, 987, 1155, 1344, 1431
HphI GGTGA 4 cut(s) 160, 676, 1090, 1333
Hpy166II GTNNAC 4 cut(s) 348, 889, 957, 997
Hpy188I TCNGA 3 cut(s) 134, 910, 1479
Hpy188III TCNNGA 4 cut(s) 73, 474, 814, 1033
Hpy8I GTNNAC 4 cut(s) 348, 889, 957, 997
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 4 cut(s) 175, 316, 1111, 1556
HpyCH4III ACNGT 6 cut(s) 113, 516, 691, 886, 961, 1146
HpyCH4IV ACGT 3 cut(s) 77, 240, 1557
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 1390, 1427, 1436
HpyF3I CTNAG 3 cut(s) 123, 443, 615
HpySE526I ACGT 3 cut(s) 77, 240, 1557
HspAI GCGC 1 cut(s) 1544
Ksp22I TGATCA 1 cut(s) 1263
Kzo9I GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
LguI GCTCTTC 1 cut(s) 520
LmnI GCTCC 1 cut(s) 1196
Lsp1109I GCAGC 4 cut(s) 216, 684, 706, 1430
LweI GCATC 6 cut(s) 301, 403, 1008, 1096, 1290, 1417
MaeI CTAG 2 cut(s) 500, 980
MaeII ACGT 3 cut(s) 77, 240, 1557
MaeIII GTNAC 5 cut(s) 140, 214, 425, 742, 1096
MalI GATC 6 cut(s) 136, 383, 402, 472, 1265, 1515
MboI GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
MboII GAAGA 9 cut(s) 55, 73, 253, 537, 571, 946, 1228, 1345, 1453
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 927
MlsI TGGCCA 1 cut(s) 106
MluCI AATT 7 cut(s) 587, 598, 809, 843, 1128, 1215, 1487
MluNI TGGCCA 1 cut(s) 106
MlyI GAGTC 2 cut(s) 768, 1104
MmeI TCCRAC 5 cut(s) 112, 229, 360, 736, 1174
Mox20I TGGCCA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 106
MseI TTAA 4 cut(s) 300, 386, 405, 1579
MslI CAYNNNNRTG 1 cut(s) 946
Msp20I TGGCCA 1 cut(s) 106
MspA1I CMGCKG 2 cut(s) 697, 967
MspI CCGG 5 cut(s) 54, 987, 1155, 1344, 1431
MspR9I CCNGG 7 cut(s) 54, 662, 789, 834, 1155, 1432, 1548
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 4 cut(s) 662, 789, 834, 1548
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 4 cut(s) 26, 1390, 1427, 1436
NciI CCSGG 3 cut(s) 54, 1155, 1432
NcoI CCATGG 3 cut(s) 221, 701, 1073
NdeI CATATG 1 cut(s) 1040
NdeII GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
NlaIV GGNNCC 3 cut(s) 163, 626, 1153
NmuCI GTSAC 2 cut(s) 214, 1096
NspI RCATGY 3 cut(s) 955, 1273, 1536
OliI CACNNNNGTG 1 cut(s) 946
PagI TCATGA 1 cut(s) 813
PciSI GCTCTTC 1 cut(s) 520
PfeI GAWTC 5 cut(s) 876, 937, 1052, 1255, 1474
PkrI GCNGC 5 cut(s) 206, 696, 699, 1305, 1420
PleI GAGTC 2 cut(s) 767, 1103
PpsI GAGTC 2 cut(s) 767, 1103
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 4 cut(s) 660, 787, 832, 1546
PspFI CCCAGC 2 cut(s) 96, 182
PspGI CCWGG 4 cut(s) 660, 787, 832, 1546
PspN4I GGNNCC 3 cut(s) 163, 626, 1153
PspPI GGNCC 2 cut(s) 1133, 1151
PstI CTGCAG 1 cut(s) 1420
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 2 cut(s) 697, 967
RsaI GTAC 2 cut(s) 869, 956
RsaNI GTAC 2 cut(s) 868, 955
RseI CAYNNNNRTG 1 cut(s) 946
SapI GCTCTTC 1 cut(s) 520
SaqAI TTAA 4 cut(s) 300, 386, 405, 1579
SatI GCNGC 5 cut(s) 205, 695, 698, 1304, 1419
Sau3AI GATC 6 cut(s) 134, 381, 400, 470, 1263, 1513
Sau96I GGNCC 2 cut(s) 1133, 1151
SchI GAGTC 2 cut(s) 768, 1104
ScrFI CCNGG 7 cut(s) 54, 662, 789, 834, 1155, 1432, 1548
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 6 cut(s) 301, 403, 1008, 1096, 1290, 1417
SfcI CTRYAG 1 cut(s) 1416
SinI GGWCC 2 cut(s) 1133, 1151
SmiMI CAYNNNNRTG 1 cut(s) 946
Sse9I AATT 7 cut(s) 587, 598, 809, 843, 1128, 1215, 1487
SsiI CCGC 3 cut(s) 1057, 1295, 1304
SspI AATATT 1 cut(s) 409
SspMI CTAG 2 cut(s) 500, 980
StyD4I CCNGG 7 cut(s) 52, 660, 787, 832, 1153, 1430, 1546
StyI CCWWGG 4 cut(s) 221, 701, 1073, 1136
TaaI ACNGT 6 cut(s) 113, 516, 691, 886, 961, 1146
TaiI ACGT 3 cut(s) 80, 243, 1560
TaqI TCGA 5 cut(s) 174, 309, 1032, 1104, 1512
TasI AATT 7 cut(s) 587, 598, 809, 843, 1128, 1215, 1487
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 5 cut(s) 876, 937, 1052, 1255, 1474
Tru1I TTAA 4 cut(s) 300, 386, 405, 1579
Tru9I TTAA 4 cut(s) 300, 386, 405, 1579
TscAI CASTG 3 cut(s) 519, 889, 964
TseFI GTSAC 2 cut(s) 214, 1096
TseI GCWGC 4 cut(s) 204, 694, 697, 1418
Tsp45I GTSAC 2 cut(s) 214, 1096
TspDTI ATGAA 8 cut(s) 253, 494, 572, 608, 727, 802, 947, 1432
TspGWI ACGGA 2 cut(s) 537, 885
TspRI CASTG 3 cut(s) 519, 889, 964
VpaK11BI GGWCC 2 cut(s) 1133, 1151
XceI RCATGY 3 cut(s) 955, 1273, 1536
XcmI CCANNNNNNNNNTGG 2 cut(s) 1071, 1248
XspI CTAG 2 cut(s) 500, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.