Rh5CG005400

oligopeptide transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
356453 .. 361107
4655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG005400.1

Sequence Viewer

Length: 1590 bp
ATGACACGGATGAAATTTTTCCTGTTTGCCTTTGCAGCAAGCTTTTTCTATTATTTGTTCCCTGGCTATCTTTTCCAAATCTTGTCATTCTTCTCATGGGTCTGCTGGGCTTGGCCACACAGTATCACTGCTCAGCAAATCGGCTCAGGTGCCAAGGGACTTGGGATTGGTGCCTTCACCCTCGATTGGGCTGGCATTTCAGCTTATCACGGCAACCCCCTCGTCACACCTTGGGTTTCCATTCTCAATGTCGGAGTTGGTTTTTTCATGTTCATCTACATAATTCTCCCTCTATGCTACTGGAAGTATGACACTTTTGATGCTCGAAAGTTTCCTATATTTTCCAACCAGCTATTCACCAATAAAGGCCTTAAATATGACACTACCAAGATCACGACACCACAATTAGAGCTTGACATTGCAGCTTATGATAATTATGGGAAGCTCTATCTTAGCCCTCTTTTCGCTTTATCCATTGGATCAGGATTTGCAAGATTTTCAGCAACCCTTATTCACGTGGCACTCTTTCATGGCGGTGCTATTTTGAAGCAAAGCAAATCAGCAGTGAATAATGCAAAAATGGATATCCATGAAAAATTGATGCAAAGCTACAAGCACGTGCCTGAATGGTGGTTCCTCATCATACTCTTTTTTAGCATTGCCCTCTCCCTGCTGATGTCTTTTGTATGGAGAGAAACTGTGCAGCTGGCATGGTGGGGAATGATCTTCGCATTTGTTTTGTCTTTCATTGTCACTCTCCCAGTTGGGGTCATTCAAGCAACCACCAACCAACAACCTGGATTTGACATTATAGCACAGTTCATGATTGGTTATGTGCTCCCAGGAAAACCCATAGCAAACCTGCTTTTCAAAATCTATGGAAGAATCAGCACTGTCCATGCTCTCTCTTTCTTGTCTGACCTTAAACTCGGGGTCTATATGAAGATTCCACCTCGGTGCATGTACACAGCTCAGCTGGTGGGAACTCTGGTTTCTGGTGTTGTGAACCTTGCAGTTGCATGGTGGATGTTGGAGGGCATTCAGAACATATGCGACACTGAAGTACTCCCCCCAGACAGTCCATGGACTTGTCCTAAATACAGAGTCACCTTTGATGCTTCTGTTATATGGGGCCTGATTGGACCAAGGAGACTGTTTGGACCTGGAGGACTGTATAGGAACTTGGTATGGCTATTTCTTGTTGGAGCTATCTTGCCAGTTCCTATTTGGGTGTTGAGCAAAATCTTCCCCGACAAGAAATGGATTCCGCTGATCAACATGCCAGTCATTCTTTACGGCTTTGCTGGGTTGCCACCAGCAACTCCCACCAACATAGCGAGCTGGCTCATCACTGGAGCTATCTTCAACTACTTCATCTTCAAATACCACAAGCGTTGGTGGCAGAAGTACAACTATGTTCTCTCTGCAGCATTGGATGCCGGGACAGCTTTCATGGGTGTCTTACTCTTCTTTGCGTTGCAGAACAACAACATTCTTGTCCATTGGTGGGGGAGTGAAGCTGATCATTGCCCTTTGGCATCATGCCCTACTGCACCAGGCATTATAGTCAAAGGATGTCCGGTTTTTTAA

Protein Analysis

529

Amino Acids

59.71

Weight (kDa)

9.28

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 492 4.3e-121 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 870
AccB1I GGYRCC 2 cut(s) 149, 170
AciI CCGC 2 cut(s) 534, 1268
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 1080
AcvI CACGTG 2 cut(s) 517, 619
AfaI GTAC 3 cut(s) 965, 1065, 1409
AfiI CCNNNNNNNGG 4 cut(s) 186, 187, 766, 1507
AgsI TTSAA 5 cut(s) 547, 776, 871, 1366, 1381
AjnI CCWGG 5 cut(s) 61, 796, 841, 1162, 1555
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 1 cut(s) 955
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 1 cut(s) 1144
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 3 cut(s) 113, 367, 1132
ApeKI GCWGC 4 cut(s) 35, 422, 703, 1427
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 1132, 1142, 1160
AsuC2I CCSGG 1 cut(s) 1441
AsuHPI GGTGA 3 cut(s) 169, 349, 1099
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 2 cut(s) 1142, 1160
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 2 cut(s) 149, 170
BbrPI CACGTG 2 cut(s) 517, 619
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 47, 434, 715, 1439
BceAI ACGGC 2 cut(s) 226, 1312
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 5 cut(s) 63, 798, 843, 1164, 1557
BclI TGATCA 2 cut(s) 1272, 1522
BcnI CCSGG 1 cut(s) 1441
BcoDI GTCTC 1 cut(s) 1144
BfmI CTRYAG 1 cut(s) 1425
BfuAI ACCTGC 1 cut(s) 870
BisI GCNGC 4 cut(s) 36, 423, 704, 1428
BlpI GCTNAGC 2 cut(s) 132, 972
BlsI GCNGC 4 cut(s) 37, 424, 705, 1429
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 6 cut(s) 63, 798, 843, 1164, 1441, 1557
Bme18I GGWCC 2 cut(s) 1142, 1160
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 3 cut(s) 1132, 1142, 1160
BmiI GGNNCC 4 cut(s) 151, 172, 635, 1133
BmrFI CCNGG 6 cut(s) 63, 798, 843, 1164, 1441, 1557
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 5 cut(s) 310, 591, 1105, 1426, 1547
BmuI ACTGGG 1 cut(s) 755
BpmI CTGGAG 2 cut(s) 1185, 1374
Bpu10I CCTNAGC 1 cut(s) 145
Bpu1102I GCTNAGC 2 cut(s) 132, 972
BpuMI CCSGG 1 cut(s) 1441
BsaAI YACGTR 2 cut(s) 517, 619
BsaJI CCNNGG 7 cut(s) 61, 153, 230, 841, 953, 1082, 1145
BsaWI WCCGGW 1 cut(s) 1579
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 187, 766, 1507
Bse1I ACTGG 5 cut(s) 305, 761, 1217, 1283, 1357
Bse3DI GCAATG 3 cut(s) 417, 657, 1525
BseBI CCWGG 5 cut(s) 63, 798, 843, 1164, 1557
BseDI CCNNGG 7 cut(s) 61, 153, 230, 841, 953, 1082, 1145
BseGI GGATG 4 cut(s) 15, 1032, 1441, 1580
BseLI CCNNNNNNNGG 4 cut(s) 186, 187, 766, 1507
BseMI GCAATG 3 cut(s) 417, 657, 1525
BseMII CTCAG 3 cut(s) 146, 159, 986
BseNI ACTGG 5 cut(s) 305, 761, 1217, 1283, 1357
BseXI GCAGC 4 cut(s) 47, 434, 715, 1439
BseYI CCCAGC 2 cut(s) 105, 1304
BsgI GTGCAG 2 cut(s) 722, 1536
BshFI GGCC 3 cut(s) 115, 369, 1134
BshNI GGYRCC 2 cut(s) 149, 170
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 2 cut(s) 1440, 1580
BslFI GGGAC 2 cut(s) 171, 1456
BslI CCNNNNNNNGG 4 cut(s) 186, 187, 766, 1507
BsmAI GTCTC 1 cut(s) 1144
BsmFI GGGAC 2 cut(s) 171, 1456
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 3 cut(s) 115, 369, 1134
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 840
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 5 cut(s) 390, 479, 723, 1272, 1522
Bsp1720I GCTNAGC 2 cut(s) 132, 972
Bsp19I CCATGG 1 cut(s) 1082
BspACI CCGC 2 cut(s) 534, 1268
BspANI GGCC 3 cut(s) 115, 369, 1134
BspCNI CTCAG 3 cut(s) 145, 158, 985
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 4 cut(s) 151, 172, 635, 1133
BspMAI CTGCAG 1 cut(s) 1429
BspMI ACCTGC 1 cut(s) 870
BspPI GGATC 1 cut(s) 487
BspT107I GGYRCC 2 cut(s) 149, 170
BsrDI GCAATG 3 cut(s) 417, 657, 1525
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 5 cut(s) 305, 761, 1217, 1283, 1357
BssECI CCNNGG 7 cut(s) 61, 153, 230, 841, 953, 1082, 1145
BssMI GATC 5 cut(s) 390, 479, 723, 1272, 1522
BssT1I CCWWGG 4 cut(s) 153, 230, 1082, 1145
Bst2UI CCWGG 5 cut(s) 63, 798, 843, 1164, 1557
Bst4CI ACNGT 7 cut(s) 122, 700, 819, 895, 1079, 1155, 1173
Bst6I CTCTTC 1 cut(s) 1472
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstAUI TGTACA 1 cut(s) 963
BstBAI YACGTR 2 cut(s) 517, 619
BstC8I GCNNGC 5 cut(s) 40, 193, 708, 1339, 1343
BstDEI CTNAG 4 cut(s) 132, 145, 452, 972
BstDSI CCRYGG 1 cut(s) 1082
BstF5I GGATG 4 cut(s) 15, 1032, 1441, 1580
BstKTI GATC 5 cut(s) 393, 482, 726, 1275, 1525
BstMAI GTCTC 1 cut(s) 1144
BstMBI GATC 5 cut(s) 390, 479, 723, 1272, 1522
BstMWI GCNNNNNNNGC 4 cut(s) 35, 1399, 1436, 1445
BstNI CCWGG 5 cut(s) 63, 798, 843, 1164, 1557
BstNSI RCATGY 2 cut(s) 964, 1282
BstSCI CCNGG 6 cut(s) 61, 796, 841, 1162, 1439, 1555
BstSFI CTRYAG 1 cut(s) 1425
BstV1I GCAGC 4 cut(s) 47, 434, 715, 1439
BstXI CCANNNNNNTGG 1 cut(s) 797
BsuRI GGCC 3 cut(s) 115, 369, 1134
BtgI CCRYGG 1 cut(s) 1082
BtsCI GGATG 4 cut(s) 15, 1032, 1441, 1580
BtsI GCAGTG 2 cut(s) 126, 570
BtsIMutI CAGTG 5 cut(s) 126, 570, 891, 1056, 1350
BveI ACCTGC 1 cut(s) 870
Cac8I GCNNGC 5 cut(s) 40, 193, 708, 1339, 1343
CciI TCATGA 1 cut(s) 822
Cfr13I GGNCC 3 cut(s) 1132, 1142, 1160
Csp6I GTAC 3 cut(s) 964, 1064, 1408
CspCI CAANNNNNGTGG 2 cut(s) 1376, 1411
CviQI GTAC 3 cut(s) 964, 1064, 1408
DdeI CTNAG 4 cut(s) 132, 145, 452, 972
DpnI GATC 5 cut(s) 392, 481, 725, 1274, 1524
DpnII GATC 5 cut(s) 390, 479, 723, 1272, 1522
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 1472
EarI CTCTTC 1 cut(s) 1472
Eco130I CCWWGG 4 cut(s) 153, 230, 1082, 1145
Eco147I AGGCCT 1 cut(s) 369
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 1142, 1160
Eco57I CTGAAG 1 cut(s) 1080
Eco72I CACGTG 2 cut(s) 517, 619
Eco88I CYCGRG 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 1132
EcoRII CCWGG 5 cut(s) 61, 796, 841, 1162, 1555
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 4 cut(s) 153, 230, 1082, 1145
ErhI CCWWGG 4 cut(s) 153, 230, 1082, 1145
FaqI GGGAC 2 cut(s) 171, 1456
FauNDI CATATG 1 cut(s) 1049
FbaI TGATCA 2 cut(s) 1272, 1522
Fnu4HI GCNGC 4 cut(s) 36, 423, 704, 1428
FokI GGATG 3 cut(s) 22, 1039, 1448
Fsp4HI GCNGC 4 cut(s) 36, 423, 704, 1428
GluI GCNGC 4 cut(s) 36, 423, 704, 1428
GsaI CCCAGC 2 cut(s) 109, 1308
GsuI CTGGAG 2 cut(s) 1185, 1374
HaeIII GGCC 3 cut(s) 115, 369, 1134
HapII CCGG 2 cut(s) 1440, 1580
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 4 cut(s) 885, 946, 1104, 1264
HpaII CCGG 2 cut(s) 1440, 1580
HphI GGTGA 3 cut(s) 169, 349, 1099
Hpy166II GTNNAC 2 cut(s) 966, 1006
Hpy188I TCNGA 3 cut(s) 254, 919, 1044
Hpy188III TCNNGA 3 cut(s) 394, 483, 823
Hpy8I GTNNAC 2 cut(s) 966, 1006
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 7 cut(s) 122, 700, 819, 895, 1079, 1155, 1173
HpyCH4IV ACGT 2 cut(s) 516, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 1399, 1436, 1445
HpyF3I CTNAG 4 cut(s) 132, 145, 452, 972
HpySE526I ACGT 2 cut(s) 516, 618
Ksp22I TGATCA 2 cut(s) 1272, 1522
Kzo9I GATC 5 cut(s) 390, 479, 723, 1272, 1522
LmnI GCTCC 3 cut(s) 843, 1205, 1355
Lsp1109I GCAGC 4 cut(s) 47, 434, 715, 1439
LweI GCATC 5 cut(s) 310, 591, 1105, 1426, 1547
MaeII ACGT 2 cut(s) 516, 618
MaeIII GTNAC 3 cut(s) 223, 751, 1105
MalI GATC 5 cut(s) 392, 481, 725, 1274, 1524
MboI GATC 5 cut(s) 390, 479, 723, 1272, 1522
MboII GAAGA 8 cut(s) 82, 718, 894, 955, 1237, 1354, 1369, 1459
MhlI GDGCHC 1 cut(s) 840
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 5 cut(s) 14, 282, 404, 433, 596
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 1113
MmeI TCCRAC 4 cut(s) 232, 369, 1011, 1183
MnlI CCTC 9 cut(s) 191, 230, 300, 468, 647, 674, 963, 1027, 1160
Mox20I TGGCCA 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 115
MseI TTAA 3 cut(s) 372, 924, 1588
MslI CAYNNNNRTG 2 cut(s) 534, 955
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 3 cut(s) 706, 976, 1270
MspI CCGG 2 cut(s) 1440, 1580
MspR9I CCNGG 6 cut(s) 63, 798, 843, 1164, 1441, 1557
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 5 cut(s) 63, 798, 843, 1164, 1557
MwoI GCNNNNNNNGC 4 cut(s) 35, 1399, 1436, 1445
NciI CCSGG 1 cut(s) 1441
NcoI CCATGG 1 cut(s) 1082
NdeI CATATG 1 cut(s) 1049
NdeII GATC 5 cut(s) 390, 479, 723, 1272, 1522
NlaIV GGNNCC 4 cut(s) 151, 172, 635, 1133
NmuCI GTSAC 3 cut(s) 223, 751, 1105
NspI RCATGY 2 cut(s) 964, 1282
OliI CACNNNNGTG 1 cut(s) 955
PagI TCATGA 1 cut(s) 822
PceI AGGCCT 1 cut(s) 369
PctI GAATGC 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 3 cut(s) 885, 946, 1264
PkrI GCNGC 4 cut(s) 37, 424, 705, 1429
PleI GAGTC 1 cut(s) 1112
PmaCI CACGTG 2 cut(s) 517, 619
PmlI CACGTG 2 cut(s) 517, 619
PpsI GAGTC 1 cut(s) 1112
Ppu21I YACGTR 2 cut(s) 517, 619
Psp6I CCWGG 5 cut(s) 61, 796, 841, 1162, 1555
PspCI CACGTG 2 cut(s) 517, 619
PspFI CCCAGC 2 cut(s) 105, 1304
PspGI CCWGG 5 cut(s) 61, 796, 841, 1162, 1555
PspN4I GGNNCC 4 cut(s) 151, 172, 635, 1133
PspPI GGNCC 3 cut(s) 1132, 1142, 1160
PstI CTGCAG 1 cut(s) 1429
PvuII CAGCTG 2 cut(s) 706, 976
RsaI GTAC 3 cut(s) 965, 1065, 1409
RsaNI GTAC 3 cut(s) 964, 1064, 1408
RseI CAYNNNNRTG 2 cut(s) 534, 955
SaqAI TTAA 3 cut(s) 372, 924, 1588
SatI GCNGC 4 cut(s) 36, 423, 704, 1428
Sau3AI GATC 5 cut(s) 390, 479, 723, 1272, 1522
Sau96I GGNCC 3 cut(s) 1132, 1142, 1160
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 1 cut(s) 1113
ScrFI CCNGG 6 cut(s) 63, 798, 843, 1164, 1441, 1557
SduI GDGCHC 1 cut(s) 840
SfaNI GCATC 5 cut(s) 310, 591, 1105, 1426, 1547
SfcI CTRYAG 1 cut(s) 1425
SinI GGWCC 2 cut(s) 1142, 1160
SmiMI CAYNNNNRTG 2 cut(s) 534, 955
Sse9I AATT 5 cut(s) 14, 282, 404, 433, 596
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 2 cut(s) 534, 1268
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 6 cut(s) 61, 796, 841, 1162, 1439, 1555
StyI CCWWGG 4 cut(s) 153, 230, 1082, 1145
TaaI ACNGT 7 cut(s) 122, 700, 819, 895, 1079, 1155, 1173
TaiI ACGT 2 cut(s) 519, 621
TaqI TCGA 2 cut(s) 183, 325
TasI AATT 5 cut(s) 14, 282, 404, 433, 596
TatI WGTACW 3 cut(s) 963, 1063, 1407
TfiI GAWTC 3 cut(s) 885, 946, 1264
Tru1I TTAA 3 cut(s) 372, 924, 1588
Tru9I TTAA 3 cut(s) 372, 924, 1588
TscAI CASTG 5 cut(s) 133, 570, 898, 1063, 1357
TseFI GTSAC 3 cut(s) 223, 751, 1105
TseI GCWGC 4 cut(s) 35, 422, 703, 1427
Tsp45I GTSAC 3 cut(s) 223, 751, 1105
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 5 cut(s) 133, 570, 898, 1063, 1357
VpaK11BI GGWCC 2 cut(s) 1142, 1160
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 964, 1282
XcmI CCANNNNNNNNNTGG 2 cut(s) 1080, 1224
XmnI GAANNNNTTC 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.