MD00G1175300.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0006953
Physical Location & Seq
Reverse (-)
40663527 .. 40664824
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1175300.v1.1.491

Sequence Viewer

Length: 258 bp
ATGACGATGCACTCAAACAAGTTGAAGATGAAAGTCTTTCAGCGGTTTTCTACTTCACCGAACGTCGGGGACCCAGTTCTGACTGCAGGTTGTTCCTCATTGTACCGGTTGGGAGTTTACAAGACGCCAACTTTCCATTTCTTTCTAAAAGGGGAAAAGGTTGATGAACTTGCCAAACCTTCTATCAGCAGCTTGTTAAAGACTCTCGCAAATGTTTACAATCCATCTGGGATGAAGAAAAGGATAATACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

10.07

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AciI CCGC 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 65
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 2 cut(s) 192, 254
AluI AGCT 2 cut(s) 192, 254
ApeKI GCWGC 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 71, 72
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 105
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 83
BspACI CCGC 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 71, 72
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 103
CspAI ACCGGT 1 cut(s) 105
CviJI RGCY 2 cut(s) 192, 254
CviKI_1 RGCY 2 cut(s) 192, 254
CviQI GTAC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 70
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 118, 217
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 118, 217
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 10, 86
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 125
KflI GGGWCCC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 72, 87, 119, 213
Lsp1109I GCAGC 1 cut(s) 201
MaeII ACGT 1 cut(s) 63
MboII GAAGA 2 cut(s) 37, 247
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 1 cut(s) 106
MseI TTAA 2 cut(s) 197, 256
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 71, 72
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 71, 72
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 197, 256
SatI GCNGC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 196
SetI ASST 6 cut(s) 66, 91, 162, 181, 194, 256
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 70
SsiI CCGC 1 cut(s) 43
TaiI ACGT 1 cut(s) 66
Tru1I TTAA 2 cut(s) 197, 256
Tru9I TTAA 2 cut(s) 197, 256
TseI GCWGC 1 cut(s) 189
TspDTI ATGAA 3 cut(s) 44, 180, 248
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.