MD10G1322800.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006953
Physical Location & Seq
Reverse (-)
40413649 .. 40419122
5474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1322800.v1.1.491

Sequence Viewer

Length: 498 bp
ATGTCTCTGTTGCAAGGCAAATGGATCAAGTTTGTCAAGGGCCGATGGGACAAGGAGGATTGGATTTCATATTGGCAGAAATACAAGGCCTCCCTTTCTAAAAAAAAAAGTGTTCAAAAGTGTTGGTGGTGTATGTATAGTGTAGGCTATCAAATTTCTTCTCCTCCTCACGTCGCAGATCGCCTTCCAAGAATCAAGATCCTGAAGAGTCCATCTGGGATGAAGAAAAGGGGAAGACGACAAGGATCTAAGCAAGTTAAGAATGAAGAAGAAGTTGATCCGTCAAAACTTACAGAGGTACTTCCTAGTAGGTTTCCTGCATCAGCATTTCCCACAGTGATGGAGGCAGTTGAATCTTTACCTGAGGCAGAGCCCTCGAGTGAGTTGTGGTGGTTTGCCAAGGGCCTATTTACATCTGATGAGAAGAGGGAGAGATTCTGTGAGTGGGAAGATAATCGGGCCAAGCTTGAATGGCTCCATCGCGAAGTGGCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

166

Amino Acids

19.47

Weight (kDa)

9.4

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 483
AclWI GGATC 4 cut(s) 32, 193, 253, 272
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 300
AgsI TTSAA 3 cut(s) 116, 353, 470
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 4 cut(s) 32, 193, 253, 272
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 5 cut(s) 40, 87, 403, 459, 489
ApoI RAATTY 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 40, 403, 459
AvaI CYCGRG 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 363
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 241
BccI CCATC 4 cut(s) 39, 220, 334, 486
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 3 cut(s) 40, 403, 459
BmiI GGNNCC 1 cut(s) 476
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse21I CCTNAGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 2 cut(s) 153, 156
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 42, 89, 405, 461, 491
BsiHKCI CYCGRG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 5 cut(s) 42, 89, 405, 461, 491
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 5 cut(s) 24, 178, 198, 245, 277
Bsp68I TCGCGA 1 cut(s) 483
BspANI GGCC 5 cut(s) 42, 89, 405, 461, 491
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 476
BspPI GGATC 4 cut(s) 32, 193, 253, 272
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 5 cut(s) 24, 178, 198, 245, 277
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 200, 419
BstDEI CTNAG 2 cut(s) 249, 363
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 5 cut(s) 27, 181, 201, 248, 280
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 5 cut(s) 24, 178, 198, 245, 277
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstUI CGCG 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 198, 245
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 2 cut(s) 198, 245
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 5 cut(s) 42, 89, 405, 461, 491
BtgZI GCGATG 1 cut(s) 464
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 342
BtuMI TCGCGA 1 cut(s) 483
Cfr13I GGNCC 3 cut(s) 40, 403, 459
Csp6I GTAC 1 cut(s) 299
CviJI RGCY 9 cut(s) 42, 89, 147, 373, 405, 461, 466, 475, 491
CviKI_1 RGCY 9 cut(s) 42, 89, 147, 373, 405, 461, 466, 475, 491
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 2 cut(s) 249, 363
DpnI GATC 5 cut(s) 26, 180, 200, 247, 279
DpnII GATC 5 cut(s) 24, 178, 198, 245, 277
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 200, 419
EarI CTCTTC 2 cut(s) 200, 419
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 399
FaiI YATR 3 cut(s) 70, 134, 138
FaqI GGGAC 1 cut(s) 62
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 1 cut(s) 306
HaeIII GGCC 5 cut(s) 42, 89, 405, 461, 491
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 4 cut(s) 192, 208, 353, 435
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 3 cut(s) 196, 202, 482
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 13, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 2 cut(s) 249, 363
HpySE526I ACGT 1 cut(s) 171
Kzo9I GATC 5 cut(s) 24, 178, 198, 245, 277
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 4 cut(s) 201, 215, 330, 375
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 171
MalI GATC 5 cut(s) 26, 180, 200, 247, 279
MboI GATC 5 cut(s) 24, 178, 198, 245, 277
MboII GAAGA 8 cut(s) 150, 217, 235, 246, 278, 281, 436, 461
MflI RGATCY 2 cut(s) 198, 245
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 9 cut(s) 49, 100, 174, 177, 289, 337, 358, 385, 420
MseI TTAA 2 cut(s) 258, 496
MslI CAYNNNNRTG 1 cut(s) 338
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 472
NdeII GATC 5 cut(s) 24, 178, 198, 245, 277
NlaIV GGNNCC 1 cut(s) 476
NruI TCGCGA 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 376
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 192, 353, 435
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 476
PspPI GGNCC 3 cut(s) 40, 403, 459
PspXI VCTCGAGB 1 cut(s) 376
PsuI RGATCY 2 cut(s) 198, 245
RruI TCGCGA 1 cut(s) 483
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 258, 496
Sau3AI GATC 5 cut(s) 24, 178, 198, 245, 277
Sau96I GGNCC 3 cut(s) 40, 403, 459
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 375
SetI ASST 5 cut(s) 174, 300, 314, 364, 468
SfaNI GCATC 1 cut(s) 329
Sfr274I CTCGAG 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 1 cut(s) 153
SseBI AGGCCT 1 cut(s) 89
SspMI CTAG 1 cut(s) 306
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 377
TasI AATT 1 cut(s) 153
TfiI GAWTC 3 cut(s) 192, 353, 435
Tru1I TTAA 2 cut(s) 258, 496
Tru9I TTAA 2 cut(s) 258, 496
TscAI CASTG 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 57, 236, 279
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 342
XapI RAATTY 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 376
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.