MD05G1346000.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006953
Physical Location & Seq
Reverse (-)
46557275 .. 46566490
9216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1346000.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGCGAAGAGAAATCTGGGGTTTTTGATGCGGCAGTTGCTGGTCAGTAGCAACAACCCTGGTGCCGGTGTTGGTTTTCCCTTCCACCACCGTAGGCATTTTGTTTCCAGTTCTACCCAAACCCTAACCCTAACCCTACCCTGCTCATCGATTATTCCATCTTATTCTCTTCATACTCTCCAACACCGAAGATTCCTCTGTTCCTGGACGGATTCGGACGGCGATTGGGGTCCGTTGCCCGATGTTTTGCATCCAGCACCACCTCCTCCTCTACCTCCATTTAGGTATTGGTATTGGCCACCTGGTACACTACCTCCACCTCCATATCCACGAAACGCTGACCTATGTAGTTCCCCTATTGGTTATCACAAGGCACTAAAAGAAATTCAAGATGAGGGCCTTTCATCGGTTCTCTTCTTCACTGAAGACCATTGCCGGACAAGCTCTAAAGCGATACATCCATTATTTCTGGATTTATGCAACAAGTGTAAACATATGACAGTGTATGTTCTTCCCCTGCCAAAGACTGGACTATTCTCAATGCATATGCTGGGTCTCAAGTCGCCAACGTTCCAATTCTATCTCCATGGGGAAAAGGTGAAAGAGCTTTCCACTGGATCCATGGGACGCGTTTTTAAGACTTTAGAAAATGTCTACAGTCCATCTGGGATGAAGAAAAGGATAAGACGACGCAGATCTAAGGAAGCTAAGAAAGAAGAAGTTGATCCCTCCAAACTTTCTAAGGTACTTCCGAGTAGGTTTCATGCATCAGAAGTTCCTAAAGTGATGGAGGCACTTGAATCTTTACCTGAGGCAAAGCCCTTGAGCAACTTGTGGTGGTTTGCCAGAGGGCTATTTACATCGCATGAGAAGAGAGAGAGATTTTCTGGTTTGGAAGATGATCGGGCCAAGCTTGAATGGCTCAATCACGAAATGGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

315

Amino Acids

35.89

Weight (kDa)

9.45

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 630
AciI CCGC 1 cut(s) 31
AclI AACGTT 1 cut(s) 569
AclWI GGATC 3 cut(s) 612, 625, 719
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 307, 747
AfiI CCNNNNNNNGG 3 cut(s) 65, 406, 527
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 3 cut(s) 389, 800, 917
AjnI CCWGG 3 cut(s) 58, 203, 301
AluBI AGCT 4 cut(s) 444, 607, 707, 913
AluI AGCT 4 cut(s) 444, 607, 707, 913
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 3 cut(s) 612, 625, 719
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 3 cut(s) 296, 397, 906
ApoI RAATTY 1 cut(s) 384
AspS9I GGNCC 3 cut(s) 230, 397, 906
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 810
BalI TGGCCA 1 cut(s) 298
BamHI GGATCC 1 cut(s) 617
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 432
BccI CCATC 3 cut(s) 166, 670, 781
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 3 cut(s) 60, 205, 303
BcoDI GTCTC 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 655
BglII AGATCT 1 cut(s) 695
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 60, 205, 303
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 230, 397, 906
BmiI GGNNCC 3 cut(s) 64, 231, 619
BmrFI CCNGG 3 cut(s) 60, 205, 303
BmsI GCATC 3 cut(s) 18, 259, 776
BpiI GAAGAC 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 542, 844
Bsa29I ATCGAT 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 58, 586, 621
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 406, 527
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 108, 532, 619
Bse21I CCTNAGG 1 cut(s) 810
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 3 cut(s) 60, 205, 303
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 3 cut(s) 58, 586, 621
BseGI GGATG 3 cut(s) 250, 457, 675
BseLI CCNNNNNNNGG 3 cut(s) 65, 406, 527
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 3 cut(s) 108, 532, 619
BseRI GAGGAG 2 cut(s) 255, 258
BseYI CCCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 630
BshFI GGCC 3 cut(s) 298, 399, 908
BshNI GGYRCC 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 149
BsiSI CCGG 2 cut(s) 66, 436
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 3 cut(s) 65, 406, 527
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 3 cut(s) 298, 399, 908
Bso31I GGTCTC 1 cut(s) 560
Bsp143I GATC 4 cut(s) 617, 695, 724, 901
Bsp19I CCATGG 2 cut(s) 586, 621
BspACI CCGC 1 cut(s) 31
BspANI GGCC 3 cut(s) 298, 399, 908
BspCNI CTCAG 1 cut(s) 802
BspDI ATCGAT 1 cut(s) 149
BspFNI CGCG 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 64, 231, 619
BspPI GGATC 3 cut(s) 612, 625, 719
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 108, 532, 619
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 58, 586, 621
BssMI GATC 4 cut(s) 617, 695, 724, 901
BssT1I CCWWGG 2 cut(s) 586, 621
Bst2UI CCWGG 3 cut(s) 60, 205, 303
Bst4CI ACNGT 3 cut(s) 92, 502, 659
Bst6I CTCTTC 4 cut(s) 2, 174, 419, 866
BstDEI CTNAG 4 cut(s) 699, 708, 741, 810
BstDSI CCRYGG 2 cut(s) 586, 621
BstF5I GGATG 3 cut(s) 250, 457, 675
BstFNI CGCG 1 cut(s) 630
BstKTI GATC 4 cut(s) 620, 698, 727, 904
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 4 cut(s) 617, 695, 724, 901
BstMWI GCNNNNNNNGC 3 cut(s) 37, 441, 919
BstNI CCWGG 3 cut(s) 60, 205, 303
BstSCI CCNGG 3 cut(s) 58, 203, 301
BstSFI CTRYAG 1 cut(s) 655
BstUI CGCG 1 cut(s) 630
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 617, 695
BstYI RGATCY 2 cut(s) 617, 695
Bsu15I ATCGAT 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 3 cut(s) 298, 399, 908
BsuTUI ATCGAT 1 cut(s) 149
BtgI CCRYGG 2 cut(s) 586, 621
BtgZI GCGATG 1 cut(s) 846
BtsCI GGATG 3 cut(s) 250, 457, 675
BtsIMutI CAGTG 3 cut(s) 420, 507, 612
CaiI CAGNNNCTG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 230, 397, 906
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 2 cut(s) 636, 699
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 2 cut(s) 306, 746
CviAII CATG 4 cut(s) 587, 622, 764, 866
CviQI GTAC 2 cut(s) 306, 746
DdeI CTNAG 4 cut(s) 699, 708, 741, 810
DpnI GATC 4 cut(s) 619, 697, 726, 903
DpnII GATC 4 cut(s) 617, 695, 724, 901
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 4 cut(s) 2, 174, 419, 866
EarI CTCTTC 4 cut(s) 2, 174, 419, 866
Eco130I CCWWGG 2 cut(s) 586, 621
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 3 cut(s) 58, 203, 301
EcoT14I CCWWGG 2 cut(s) 586, 621
EcoT22I ATGCAT 2 cut(s) 546, 769
ErhI CCWWGG 2 cut(s) 586, 621
FaeI CATG 4 cut(s) 590, 625, 767, 869
FaqI GGGAC 1 cut(s) 639
FatI CATG 4 cut(s) 586, 621, 763, 865
FauNDI CATATG 2 cut(s) 495, 546
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 3 cut(s) 237, 444, 682
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 554
HaeIII GGCC 3 cut(s) 298, 399, 908
HapII CCGG 2 cut(s) 66, 436
HgaI GACGC 2 cut(s) 636, 699
Hin1II CATG 4 cut(s) 590, 625, 767, 869
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 3 cut(s) 192, 212, 800
HpaII CCGG 2 cut(s) 66, 436
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 3 cut(s) 308, 491, 655
Hpy188I TCNGA 3 cut(s) 217, 753, 772
Hpy188III TCNNGA 3 cut(s) 389, 470, 929
Hpy8I GTNNAC 3 cut(s) 308, 491, 655
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 92, 502, 659
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 4 cut(s) 250, 480, 544, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 441, 919
HpyF3I CTNAG 4 cut(s) 699, 708, 741, 810
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 4 cut(s) 590, 625, 767, 869
Kzo9I GATC 4 cut(s) 617, 695, 724, 901
LweI GCATC 3 cut(s) 18, 259, 776
MabI ACCWGGT 1 cut(s) 301
MaeII ACGT 1 cut(s) 569
MalI GATC 4 cut(s) 619, 697, 726, 903
MboI GATC 4 cut(s) 617, 695, 724, 901
MflI RGATCY 2 cut(s) 617, 695
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 2 cut(s) 384, 575
MluI ACGCGT 1 cut(s) 628
MluNI TGGCCA 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 205
Mox20I TGGCCA 1 cut(s) 298
Mph1103I ATGCAT 2 cut(s) 546, 769
MscI TGGCCA 1 cut(s) 298
MseI TTAA 1 cut(s) 636
Msp20I TGGCCA 1 cut(s) 298
MspI CCGG 2 cut(s) 66, 436
MspR9I CCNGG 3 cut(s) 60, 205, 303
MvaI CCWGG 3 cut(s) 60, 205, 303
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 3 cut(s) 37, 441, 919
NcoI CCATGG 2 cut(s) 586, 621
NdeI CATATG 2 cut(s) 495, 546
NdeII GATC 4 cut(s) 617, 695, 724, 901
NlaIII CATG 4 cut(s) 590, 625, 767, 869
NlaIV GGNNCC 3 cut(s) 64, 231, 619
NsiI ATGCAT 2 cut(s) 546, 769
PfeI GAWTC 3 cut(s) 192, 212, 800
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 569
Psp6I CCWGG 3 cut(s) 58, 203, 301
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 3 cut(s) 58, 203, 301
PspN4I GGNNCC 3 cut(s) 64, 231, 619
PspPI GGNCC 3 cut(s) 230, 397, 906
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 2 cut(s) 617, 695
RsaI GTAC 2 cut(s) 307, 747
RsaNI GTAC 2 cut(s) 306, 746
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 4 cut(s) 617, 695, 724, 901
Sau96I GGNCC 3 cut(s) 230, 397, 906
ScrFI CCNGG 3 cut(s) 60, 205, 303
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 3 cut(s) 18, 259, 776
SfcI CTRYAG 1 cut(s) 655
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 557, 823
SmoI CTYRAG 2 cut(s) 557, 823
Sse9I AATT 2 cut(s) 384, 575
SsiI CCGC 1 cut(s) 31
StyD4I CCNGG 3 cut(s) 58, 203, 301
StyI CCWWGG 2 cut(s) 586, 621
TaaI ACNGT 3 cut(s) 92, 502, 659
TaiI ACGT 1 cut(s) 572
TaqI TCGA 1 cut(s) 149
TasI AATT 2 cut(s) 384, 575
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 3 cut(s) 192, 212, 800
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 427, 507, 619
TspDTI ATGAA 4 cut(s) 161, 393, 686, 752
TspGWI ACGGA 2 cut(s) 222, 224
TspRI CASTG 3 cut(s) 427, 507, 619
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 2 cut(s) 285, 619
XmiI GTMKAC 1 cut(s) 654
Zsp2I ATGCAT 2 cut(s) 546, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.