MD00G1175400.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0006953
Physical Location & Seq
Forward (+)
40668731 .. 40670430
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1175400.v1.1.491

Sequence Viewer

Length: 513 bp
ATGTGTGTGTTTTACCCACACATTACAAAATTTAGGGTTTGCTTTTTCAAGACTGCAGGTTGTTCCTCATTGTACCGGTTGGGAGTTTACAAGACGCCAACTTTCCATTTCTTTCTAAAAGGGGAAAAGGTTGATGAACTTGCCAAACCTTCTATCAGCAGCTTGTTAAAGACTCTCGCAAATGTTTACAATCCATCTGGGATGAAGAAAAAGGAAAGACAAGCTAAAAAAGTCGAAGTGGATCCATCACAACTTGTTGAGGTACTTCCGATTAGTTTTGTTGCATCATCATATCCTAAAGCGATGGAGGCAGTTGAGTCTTTACCTGGGGTAGAACCCGGTGACAGGCTATGGTGGTTTGCAAAAGGGCTATTTTTATCTCAGGAGAAGAGAGAGACATTTTCCAAGTTGGAAGATGAGGATGCCAAGCTTGAATGGCTGTGTAGTGAGATGGCTGAGGGGGAAGAAGGAGAGATGTTTTCTAATAAATGGCTGTATGCCAACATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

171

Amino Acids

19.44

Weight (kDa)

6.75

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 236, 249
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 2 cut(s) 74, 264
AfiI CCNNNNNNNGG 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 49, 434
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 162, 224, 430
AluI AGCT 3 cut(s) 162, 224, 430
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 236, 249
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 29
AsiGI ACCGGT 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 171
BccI CCATC 4 cut(s) 202, 253, 298, 445
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 327, 339
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 327, 339
BmsI GCATC 2 cut(s) 293, 412
Bpu10I CCTNAGC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 75
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 207, 427
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 395, 447
BseXI GCAGC 1 cut(s) 171
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 2 cut(s) 76, 339
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 394, 448
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 236, 249
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 381, 456, 510
BstF5I GGATG 2 cut(s) 207, 427
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 308, 436
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 2 cut(s) 325, 337
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 207, 427
BveI ACCTGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 75
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 73, 263
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 1 cut(s) 505
CviJI RGCY 8 cut(s) 162, 224, 349, 370, 430, 439, 455, 493
CviKI_1 RGCY 8 cut(s) 162, 224, 349, 370, 430, 439, 455, 493
CviQI GTAC 2 cut(s) 73, 263
DdeI CTNAG 3 cut(s) 381, 456, 510
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 325
FaeI CATG 1 cut(s) 508
FaiI YATR 4 cut(s) 292, 352, 498, 506
FatI CATG 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 214, 434
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
HapII CCGG 2 cut(s) 76, 339
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 172, 317
HpaII CCGG 2 cut(s) 76, 339
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 88, 187
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 49, 383
Hpy8I GTNNAC 2 cut(s) 88, 187
HpyAV CCTTC 2 cut(s) 159, 461
HpyCH4V TGCA 3 cut(s) 56, 284, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 436
HpyF3I CTNAG 3 cut(s) 381, 456, 510
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 508
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 42, 89, 183, 312, 331, 339, 352, 368
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 2 cut(s) 293, 412
MaeIII GTNAC 1 cut(s) 341
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 4 cut(s) 217, 400, 425, 476
MflI RGATCY 1 cut(s) 241
MluCI AATT 1 cut(s) 29
MlyI GAGTC 2 cut(s) 166, 326
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 76, 253, 301, 412, 451
MseI TTAA 1 cut(s) 167
MspI CCGG 2 cut(s) 76, 339
MspR9I CCNGG 2 cut(s) 327, 339
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 308, 436
NciI CCSGG 1 cut(s) 339
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 508
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 2 cut(s) 166, 325
PpsI GAGTC 2 cut(s) 166, 325
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 243
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 74, 264
RsaNI GTAC 2 cut(s) 73, 263
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 2 cut(s) 166, 326
ScrFI CCNGG 2 cut(s) 327, 339
SetI ASST 8 cut(s) 61, 132, 151, 164, 226, 264, 328, 432
SfaNI GCATC 2 cut(s) 293, 412
SfcI CTRYAG 1 cut(s) 54
Sse9I AATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 325, 337
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 29
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 150, 218
XapI RAATTY 1 cut(s) 29
XceI RCATGY 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.