MD04G1228000.v1.1

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0006953
Physical Location & Seq
Reverse (-)
30757033 .. 30758688
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1228000.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTGTGTGTTTTACCCACACATAACAAAATTTAAGGTTTTCTTTTCCAAGACTGGAGGTTGTTCCTCATTGTACCGGTTGGGAGTTTACAAGACGCCAACTTTCCATTTCTTTCTAAAAGGGGAAAAGGTTGATGAACTTGCCAAACCTTCTATCAACAGCTTGTTAAAGACTCTCGCAAATGTTTACAAGTATCCATCTGGGATGAAGAAAAGGATAATACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

77

Amino Acids

8.71

Weight (kDa)

9.91

Isoelectric Point (pI)

19.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 75
AluBI AGCT 2 cut(s) 162, 227
AluI AGCT 2 cut(s) 162, 227
ApoI RAATTY 1 cut(s) 29
AsiGI ACCGGT 1 cut(s) 75
BccI CCATC 1 cut(s) 205
BciVI GTATCC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 58
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 210
BsuI GTATCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 75
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 75
CviJI RGCY 2 cut(s) 162, 227
CviKI_1 RGCY 2 cut(s) 162, 227
CviQI GTAC 1 cut(s) 73
FaiI YATR 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FokI GGATG 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 75
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 88, 187
Hpy8I GTNNAC 2 cut(s) 88, 187
HpyAV CCTTC 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 39, 89, 186
MboII GAAGA 1 cut(s) 220
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 50, 76
MseI TTAA 3 cut(s) 33, 167, 229
MspI CCGG 1 cut(s) 76
PinAI ACCGGT 1 cut(s) 75
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 33, 167, 229
SchI GAGTC 1 cut(s) 166
SetI ASST 6 cut(s) 39, 61, 132, 151, 164, 229
SgeI CNNG 9 cut(s) 61, 66, 88, 103, 152, 175, 188, 202, 213
Sse9I AATT 1 cut(s) 29
TasI AATT 1 cut(s) 29
Tru1I TTAA 3 cut(s) 33, 167, 229
Tru9I TTAA 3 cut(s) 33, 167, 229
TspDTI ATGAA 2 cut(s) 150, 221
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.