Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014113

Physical Location & Seq

Genomic Coordinates Reverse (-)

41819054 .. 41820337

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1178400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGGATAGTGGAATAGAGATAGAGAAAGTAGAGTGGTTGGATCCAGAGATGGAGTTTCTGGCATCGAAGCGAGAGACGGGGAATGAGTGGGAGCTCTTTAAGGAGAATGTTAGGCCCTTGAAGAGAGGCCGCAAAGTCGCCATCTTAAACGAAGCTCTCAAAGTTCACAACGACAATCAACTCAAGATGTCCCTCCTTGACCAAAGAAGGCTGTTGATTCAAGCGATTGACGAGTATAAAGGCGAGGATCCTCTCCACCCATGGCTTGAGTGTATCAAGTGGGTTCAGGAAGCATTTCCACCTGGTGGAGATTCCTCGGGGTTGGTGGTGATATACGAGCAATGCGTACGTACATTTTGGCATTCAGACCGTTACAAGGATGATCTCCGCTATCTCAAAGTCTGGTTGGAATATGCTGAAAATTGTGTAGATGCTCAAGTCATATACAGTTTTCTTGATGCAAATGAAATCGGGAAGACACATGCGGTTTTCTACATCTCGCGCCGGCCAAGGCATGGCCACACGCGCAGCATGTGCGGTCCGTGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007088 GO:0007093 GO:0007094 GO:0007135 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0022414 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045144 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051177 GO:0051276 GO:0051321 GO:0051726 GO:0051754 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0061983 GO:0065007 GO:0070013 GO:0070192 GO:0070601 GO:0071173 GO:0071174 GO:0071704 GO:0071840 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903046 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 map04110 map04111 map04113 map04114 map04914

Pfam Domains

Protein Families

Mad3_BUB1_I

Protein Analysis

185

Amino Acids

21.58

Weight (kDa)

5.57

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mad3_BUB1_I	PF08311	69 - 168	1.1e-34	Mad3/BUB1 homology region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33560 AT2G33560
fragaria_vesca	FvH4_5g26460 FvH4_5g26460
malus_domestica	MD00G1178400.v1.1
prunus_persica	Prupe.5G002900_v2.0.a1
pyrus_communis	pycom06g00200
rosa_chinensis	RchiOBHm_Chr7g0217371
rosa_laevigata	RLG00000002485
rosa_multiflora	Rmu_sc0011824.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242280
rosa_rugosa	Rorug07G0168500
rosa_samantha	Rh7AG308200 Rh7BG298900 Rh7CG327500 Rh7DG307300
rosa_wichuraiana	Rw7G026130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	308, 518
AccII	CGCG	2 cut(s)	505, 529
AciI	CCGC	5 cut(s)	5, 133, 391, 488, 540
AclWI	GGATC	4 cut(s)	38, 51, 245, 258
AcoI	YGGCCR	2 cut(s)	509, 520
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	351, 355
AfiI	CCNNNNNNNGG	3 cut(s)	308, 379, 518
AgsI	TTSAA	2 cut(s)	124, 224
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	97, 158
AluI	AGCT	2 cut(s)	97, 158
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	4 cut(s)	38, 51, 245, 258
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	4 cut(s)	116, 130, 509, 520
ApeKI	GCWGC	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	507, 531
AspS9I	GGNCC	2 cut(s)	117, 542
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	2 cut(s)	43, 250
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	46, 152
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	133, 532
BlsI	GCNGC	2 cut(s)	134, 533
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	117, 542
BmiI	GGNNCC	2 cut(s)	45, 252
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	74, 424, 451
BpiI	GAAGAC	1 cut(s)	485
BpuEI	CTTGAG	3 cut(s)	170, 290, 423
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	263, 318, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 379, 518
Bse118I	RCCGGY	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	263, 318, 512
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	308, 379, 518
BseMI	GCAATG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	543
Bsh1236I	CGCG	2 cut(s)	505, 529
BshFI	GGCC	4 cut(s)	118, 132, 511, 522
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	508
BsiWI	CGTACG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	308, 379, 518
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	4 cut(s)	118, 132, 511, 522
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	43, 250, 385
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	5 cut(s)	5, 133, 391, 488, 540
BspANI	GGCC	4 cut(s)	118, 132, 511, 522
BspFNI	CGCG	2 cut(s)	505, 529
BspLI	GGNNCC	2 cut(s)	45, 252
BspPI	GGATC	4 cut(s)	38, 51, 245, 258
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	3 cut(s)	263, 318, 512
BssMI	GATC	3 cut(s)	43, 250, 385
BssT1I	CCWWGG	2 cut(s)	263, 512
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	374, 452
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	2 cut(s)	505, 529
BstHHI	GCGC	2 cut(s)	507, 531
BstKTI	GATC	3 cut(s)	46, 253, 388
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	43, 250, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	528, 537
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	2 cut(s)	488, 538
BstSCI	CCNGG	1 cut(s)	304
BstSNI	TACGTA	1 cut(s)	353
BstUI	CGCG	2 cut(s)	505, 529
BstV1I	GCAGC	1 cut(s)	543
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	2 cut(s)	43, 250
BstYI	RGATCY	2 cut(s)	43, 250
BsuRI	GGCC	4 cut(s)	118, 132, 511, 522
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	509
CfoI	GCGC	2 cut(s)	507, 531
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	117, 542
CpoI	CGGWCCG	1 cut(s)	542
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	350, 354
CspI	CGGWCCG	1 cut(s)	542
CviAII	CATG	4 cut(s)	264, 485, 518, 535
CviJI	RGCY	8 cut(s)	97, 118, 132, 158, 214, 268, 511, 522
CviKI_1	RGCY	8 cut(s)	97, 118, 132, 158, 214, 268, 511, 522
CviQI	GTAC	2 cut(s)	350, 354
DpnI	GATC	3 cut(s)	45, 252, 387
DpnII	GATC	3 cut(s)	43, 250, 385
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	2 cut(s)	509, 520
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	263, 512
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	263, 512
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	2 cut(s)	263, 512
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	4 cut(s)	267, 488, 521, 538
FaiI	YATR	9 cut(s)	240, 265, 337, 417, 446, 448, 486, 519, 536
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	263, 484, 517, 534
Fnu4HI	GCNGC	2 cut(s)	133, 532
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	133, 532
GlaI	GCGC	2 cut(s)	506, 530
GluI	GCNGC	2 cut(s)	133, 532
HaeIII	GGCC	4 cut(s)	118, 132, 511, 522
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	2 cut(s)	507, 531
Hin1II	CATG	4 cut(s)	267, 488, 521, 538
Hin6I	GCGC	2 cut(s)	505, 529
HinP1I	GCGC	2 cut(s)	505, 529
HinfI	GANTC	2 cut(s)	220, 314
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	5 cut(s)	47, 187, 290, 458, 475
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	374, 452
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	528, 537
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	4 cut(s)	267, 488, 521, 538
HspAI	GCGC	2 cut(s)	505, 529
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	43, 250, 385
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	47, 60, 275, 291, 318, 391, 521
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	3 cut(s)	74, 424, 451
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	374, 548
MalI	GATC	3 cut(s)	45, 252, 387
MboI	GATC	3 cut(s)	43, 250, 385
MboII	GAAGA	2 cut(s)	136, 490
MflI	RGATCY	2 cut(s)	43, 250
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	21, 390
MnlI	CCTC	5 cut(s)	122, 206, 241, 264, 328
Mox20I	TGGCCA	1 cut(s)	522
MroNI	GCCGGC	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	2 cut(s)	102, 149
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	505, 529
MwoI	GCNNNNNNNGC	2 cut(s)	528, 537
NaeI	GCCGGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	3 cut(s)	43, 250, 385
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	4 cut(s)	267, 488, 521, 538
NlaIV	GGNNCC	2 cut(s)	45, 252
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	2 cut(s)	488, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	220, 314
Pfl23II	CGTACG	1 cut(s)	349
PflMI	CCANNNNNTGG	2 cut(s)	308, 518
PkrI	GCNGC	2 cut(s)	134, 533
Ppu21I	YACGTR	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspLI	CGTACG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	45, 252
PspPI	GGNCC	2 cut(s)	117, 542
PsuI	RGATCY	2 cut(s)	43, 250
RsaI	GTAC	2 cut(s)	351, 355
RsaNI	GTAC	2 cut(s)	350, 354
Rsr2I	CGGWCCG	1 cut(s)	542
RsrII	CGGWCCG	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	102, 149
SatI	GCNGC	2 cut(s)	133, 532
Sau3AI	GATC	3 cut(s)	43, 250, 385
Sau96I	GGNCC	2 cut(s)	117, 542
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	99, 160, 307, 355
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	74, 424, 451
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	3 cut(s)	185, 269, 438
SmoI	CTYRAG	3 cut(s)	185, 269, 438
SnaBI	TACGTA	1 cut(s)	353
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	5 cut(s)	5, 133, 391, 488, 540
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	263, 512
TaaI	ACNGT	2 cut(s)	374, 452
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	424
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	220, 314
Tru1I	TTAA	2 cut(s)	102, 149
Tru9I	TTAA	2 cut(s)	102, 149
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	534
Van91I	CCANNNNNTGG	2 cut(s)	308, 518
VpaK11BI	GGWCC	1 cut(s)	542
XceI	RCATGY	2 cut(s)	488, 538
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.