Rorug07G0168500

Mitotic spindle checkpoint protein BUBR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014113
Physical Location & Seq
Forward (+)
13600589 .. 13601197
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0168500.1

Sequence Viewer

Length: 609 bp
ATGGCCAGAGTTCATCCAATTCTAGTAGTACCCAGGATTGATAATTCTTCTGTTAGTACCTCTCCATGTTCTGAACCATACATGACCTCAAAGAGAGAAACATTCACTATATGGATGAAGTCCCTTGTTATGCAAGGAAATGGATGCACAGCGTACGACGAAAATGGTGAGATTGTGTATCGTGTTGATAACTACGACAACAAGCACAGCAATGAAGTCTATCTCATGGATCTCCGTGGCAAAGTTCTGTTTACTCTATGTGAGCAGAAAATGTGCGTTTTCAGACCTAATTGGGAGGCTTATGAGTCCAATGGGTCTGACACGCCATTTTTTCGAGTCAGAAAGAGCAAAATTTTCGGAGGAGAGTCTTCTTATAAGGTAACCATGCCATCTGATGGAAGTTGTTACATTTTAGAAGCTGGTGGGAAATCAACATTTAGAATAAGAGATGGCAATGGAGGAGTTGTAGCCGAGGCGAAGCGAAAGCAATCGTCTTCAGGGTTAGAATTCGGAGATGATGTACTGAGTTTAGTGGTGGAGCCTCATGTGGATCACTCCTTCATCATGGCTCTTGTTACTGTTTATGGCTTAATCAAACGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007088 GO:0007093 GO:0007094 GO:0007135 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0022414 GO:0030071 GO:0031577 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045144 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051177 GO:0051276 GO:0051321 GO:0051726 GO:0051754 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0061983 GO:0065007 GO:0070013 GO:0070192 GO:0070601 GO:0071173 GO:0071174 GO:0071704 GO:0071840 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903046 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04914 map04110 map04111 map04113 map04114 map04914
Pfam Domains
Protein Families
Mad3_BUB1_I

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

6.9

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 195 3.8e-35 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33560 AT2G33560
fragaria_vesca FvH4_5g26460 FvH4_5g26460
malus_domestica MD00G1178400.v1.1
prunus_persica Prupe.5G002900_v2.0.a1
pyrus_communis pycom06g00200
rosa_chinensis RchiOBHm_Chr7g0217371
rosa_laevigata RLG00000002485
rosa_multiflora Rmu_sc0011824.1_g000009
rosa_roxburghii Rroxscaffold_3G00242280
rosa_rugosa Rorug07G0168500
rosa_samantha Rh7AG308200 Rh7BG298900 Rh7CG327500 Rh7DG307300
rosa_wichuraiana Rw7G026130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 395
AclWI GGATC 2 cut(s) 237, 558
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 351, 506
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 4 cut(s) 30, 58, 155, 522
AfiI CCNNNNNNNGG 1 cut(s) 395
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
AlwI GGATC 2 cut(s) 237, 558
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 351, 506
AsuHPI GGTGA 1 cut(s) 179
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 360, 486
BccI CCATC 3 cut(s) 389, 397, 443
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 2 cut(s) 360, 486
BsaJI CCNNGG 3 cut(s) 32, 235, 471
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse3DI GCAATG 2 cut(s) 217, 460
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 32, 235, 471
BseGI GGATG 3 cut(s) 13, 120, 149
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 2 cut(s) 217, 460
BseMII CTCAG 1 cut(s) 515
BseRI GAGGAG 2 cut(s) 375, 474
BshFI GGCC 1 cut(s) 5
BsiWI CGTACG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 229, 550
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 540
BspPI GGATC 2 cut(s) 237, 558
BsrDI GCAATG 2 cut(s) 217, 460
BssECI CCNNGG 3 cut(s) 32, 235, 471
BssMI GATC 2 cut(s) 229, 550
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 1 cut(s) 235
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 3 cut(s) 13, 120, 149
BstKTI GATC 2 cut(s) 232, 553
BstMBI GATC 2 cut(s) 229, 550
BstNI CCWGG 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 32
BstV2I GAAGAC 2 cut(s) 360, 486
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 13, 120, 149
Csp6I GTAC 4 cut(s) 29, 57, 154, 521
CviAII CATG 6 cut(s) 66, 82, 226, 385, 545, 565
CviJI RGCY 7 cut(s) 5, 299, 419, 470, 541, 569, 588
CviKI_1 RGCY 7 cut(s) 5, 299, 419, 470, 541, 569, 588
CviQI GTAC 4 cut(s) 29, 57, 154, 521
DdeI CTNAG 1 cut(s) 524
DpnI GATC 2 cut(s) 231, 552
DpnII GATC 2 cut(s) 229, 550
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 69, 85, 229, 388, 548, 568
FaqI GGGAC 1 cut(s) 106
FatI CATG 6 cut(s) 65, 81, 225, 384, 544, 564
FokI GGATG 2 cut(s) 127, 156
FspBI CTAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 6 cut(s) 69, 85, 229, 388, 548, 568
HinfI GANTC 3 cut(s) 305, 336, 365
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 7 cut(s) 73, 284, 319, 341, 359, 394, 512
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 2 cut(s) 133, 147
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 6 cut(s) 69, 85, 229, 388, 548, 568
Kzo9I GATC 2 cut(s) 229, 550
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 5 cut(s) 19, 19, 46, 405, 483
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 3 cut(s) 379, 404, 574
MalI GATC 2 cut(s) 231, 552
MboI GATC 2 cut(s) 229, 550
MboII GAAGA 3 cut(s) 39, 360, 486
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 18, 43, 289, 351, 506
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 314, 345, 374
MnlI CCTC 7 cut(s) 70, 97, 289, 353, 452, 466, 552
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
NdeII GATC 2 cut(s) 229, 550
NlaIII CATG 6 cut(s) 69, 85, 229, 388, 548, 568
NlaIV GGNNCC 1 cut(s) 540
NmeAIII GCCGAG 1 cut(s) 496
Pfl23II CGTACG 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 395
PleI GAGTC 3 cut(s) 313, 344, 373
PpsI GAGTC 3 cut(s) 313, 344, 373
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 32
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 540
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 4 cut(s) 30, 58, 155, 522
RsaNI GTAC 4 cut(s) 29, 57, 154, 521
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 590
Sau3AI GATC 2 cut(s) 229, 550
SchI GAGTC 3 cut(s) 314, 345, 374
ScrFI CCNGG 1 cut(s) 34
SetI ASST 6 cut(s) 62, 89, 289, 381, 421, 601
SfaNI GCATC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 5 cut(s) 18, 43, 289, 351, 506
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 601
TaqI TCGA 1 cut(s) 334
TasI AATT 5 cut(s) 18, 43, 289, 351, 506
TatI WGTACW 1 cut(s) 520
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TspDTI ATGAA 3 cut(s) 131, 228, 550
TspGWI ACGGA 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 395
XapI RAATTY 2 cut(s) 351, 506
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.