Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007306

Physical Location & Seq

Genomic Coordinates Reverse (-)

50127221 .. 50129189

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCCACCGCCGCCACTTCCAGATCTCGCCGAGCACTAGACTCCCGATCCGGTGGCAAAATTGTCCGCCCTCGACGGTACGCCGGTGCTAGGACTCCCTACGACCGGCCTAGGTTTGTCAATCCCGCACCACCCGAAAACCCTAATTGGTTCTCCCGGCTCATCTACTCGCCTACTCGTAAGATTGCCAGCGGCGCCGGGAAAATTATTTCCTCCGTCTTTGGTCCTGACTCTTCTTCCTCCTCCTCTTCCTCCTCAGGATGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006996 GO:0006997 GO:0006998 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071763 GO:0071840 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.62

Weight (kDa)

11.55

Isoelectric Point (pI)

78.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31430 AT4G31430 AT4G31430
fragaria_vesca	FvH4_2g36900
malus_domestica	MD00G1205700.v1.1 MD08G1130500.v1.1 MD15G1108600.v1.1
prunus_persica	Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1
pyrus_communis	pycom08g10960 pycom15g09920
rosa_chinensis	RchiOBHm_Chr6g0304881
rosa_laevigata	RLG00000010942
rosa_multiflora	Rmu_ssc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163380
rosa_rugosa	Rorug06G0336000
rosa_samantha	Rh6AG447200 Rh6BG454300 Rh6CG460700 Rh6DG447700
rosa_wichuraiana	Rw6G038930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	5 cut(s)	9, 12, 67, 126, 192
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	90, 105, 261
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	3, 107
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	2 cut(s)	157, 199
AvaII	GGWCC	1 cut(s)	224
AvrII	CCTAGG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	157, 199
BfaI	CTAG	3 cut(s)	38, 90, 111
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	2 cut(s)	12, 193
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	2 cut(s)	13, 194
Bme1390I	CCNGG	2 cut(s)	157, 199
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	157, 199
BpuMI	CCSGG	2 cut(s)	157, 199
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 105, 261
Bse118I	RCCGGY	2 cut(s)	83, 105
Bse21I	CCTNAGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	3 cut(s)	90, 105, 261
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	3 cut(s)	232, 235, 244
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	5, 109
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	51, 84, 106, 157, 198
BslI	CCNNNNNNNGG	3 cut(s)	90, 105, 261
BsnI	GGCC	2 cut(s)	5, 109
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	23, 47
BspACI	CCGC	5 cut(s)	9, 12, 67, 126, 192
BspANI	GGCC	2 cut(s)	5, 109
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	2 cut(s)	83, 105
BssAI	RCCGGY	2 cut(s)	83, 105
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	2 cut(s)	23, 47
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	2 cut(s)	238, 253
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	26, 50
BstMBI	GATC	2 cut(s)	23, 47
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 194
BstSCI	CCNGG	2 cut(s)	155, 197
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	5, 109
BtsCI	GGATG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	83, 105
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	3 cut(s)	5, 109, 160
CviKI_1	RGCY	3 cut(s)	5, 109, 160
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	256
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	2 cut(s)	25, 49
DpnII	GATC	2 cut(s)	23, 47
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	238, 253
EarI	CTCTTC	2 cut(s)	238, 253
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	110
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	110
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	12, 193
Fsp4HI	GCNGC	2 cut(s)	12, 193
FspBI	CTAG	3 cut(s)	38, 90, 111
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	12, 193
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	5, 109
HapII	CCGG	5 cut(s)	51, 84, 106, 157, 198
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	3 cut(s)	41, 94, 230
HpaII	CCGG	5 cut(s)	51, 84, 106, 157, 198
Hpy188III	TCNNGA	4 cut(s)	21, 45, 227, 258
Hpy99I	CGWCG	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 194
HpyF3I	CTNAG	1 cut(s)	256
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	23, 47
LpnPI	CCDG	9 cut(s)	34, 64, 97, 119, 170, 202, 211, 240, 243
MaeI	CTAG	3 cut(s)	38, 90, 111
MalI	GATC	2 cut(s)	25, 49
MboI	GATC	2 cut(s)	23, 47
MboII	GAAGA	3 cut(s)	225, 228, 240
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	60, 145, 204
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	35, 88, 224
MnlI	CCTC	7 cut(s)	81, 223, 250, 253, 256, 262, 265
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	5 cut(s)	51, 84, 106, 157, 198
MspR9I	CCNGG	2 cut(s)	157, 199
MwoI	GCNNNNNNNGC	2 cut(s)	11, 194
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	157, 199
NdeII	GATC	2 cut(s)	23, 47
NlaIV	GGNNCC	1 cut(s)	196
NmeAIII	GCCGAG	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	13, 194
PleI	GAGTC	3 cut(s)	35, 88, 224
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	3 cut(s)	35, 88, 224
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	12, 193
Sau3AI	GATC	2 cut(s)	23, 47
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	3 cut(s)	35, 88, 224
ScrFI	CCNGG	2 cut(s)	157, 199
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	3 cut(s)	60, 145, 204
SsiI	CCGC	5 cut(s)	9, 12, 67, 126, 192
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	3 cut(s)	38, 90, 111
StyD4I	CCNGG	2 cut(s)	155, 197
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	60, 145, 204
TauI	GCSGC	2 cut(s)	14, 195
TspGWI	ACGGA	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	3 cut(s)	38, 90, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.