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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31430 AT4G31430 AT4G31430 |
| fragaria_vesca | FvH4_2g36900 |
| malus_domestica | MD00G1205700.v1.1 MD08G1130500.v1.1 MD15G1108600.v1.1 |
| prunus_persica | Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 Prupe.1G460900_v2.0.a1 |
| pyrus_communis | pycom08g10960 pycom15g09920 |
| rosa_chinensis | RchiOBHm_Chr6g0304881 |
| rosa_laevigata | RLG00000010942 |
| rosa_multiflora | Rmu_ssc0000278.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00163380 |
| rosa_rugosa | Rorug06G0336000 |
| rosa_samantha | Rh6AG447200 Rh6BG454300 Rh6CG460700 Rh6DG447700 |
| rosa_wichuraiana | Rw6G038930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 632, 1953 |
| Acc65I | GGTACC | 1 cut(s) | 1774 |
| AccB1I | GGYRCC | 2 cut(s) | 80, 1774 |
| AccI | GTMKAC | 2 cut(s) | 522, 827 |
| AciI | CCGC | 7 cut(s) | 48, 61, 183, 540, 706, 1386, 1557 |
| AclWI | GGATC | 4 cut(s) | 12, 598, 621, 1510 |
| AcoI | YGGCCR | 3 cut(s) | 3, 101, 1857 |
| AcsI | RAATTY | 4 cut(s) | 634, 1032, 1048, 1894 |
| AcuI | CTGAAG | 4 cut(s) | 225, 513, 681, 1296 |
| AfaI | GTAC | 5 cut(s) | 95, 253, 982, 1127, 1776 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 84, 429, 655, 1239, 1540, 1568, 1630 |
| AflII | CTTAAG | 1 cut(s) | 1265 |
| AjiI | CACGTC | 1 cut(s) | 713 |
| AjnI | CCWGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| Alw26I | GTCTC | 3 cut(s) | 413, 1327, 1930 |
| AlwI | GGATC | 4 cut(s) | 12, 598, 621, 1510 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1882 |
| Ama87I | CYCGRG | 1 cut(s) | 985 |
| AoxI | GGCC | 4 cut(s) | 3, 101, 121, 1857 |
| ApeKI | GCWGC | 1 cut(s) | 1199 |
| ApoI | RAATTY | 4 cut(s) | 634, 1032, 1048, 1894 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1805, 1837 |
| Asp718I | GGTACC | 1 cut(s) | 1774 |
| AspLEI | GCGC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 3 cut(s) | 122, 864, 927 |
| AsuHPI | GGTGA | 3 cut(s) | 669, 1388, 1606 |
| AvaI | CYCGRG | 1 cut(s) | 985 |
| AvaII | GGWCC | 2 cut(s) | 864, 927 |
| BaeGI | GKGCMC | 1 cut(s) | 712 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 2 cut(s) | 80, 1774 |
| BanII | GRGCYC | 1 cut(s) | 360 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1109, 1141, 1501, 1533 |
| BbsI | GAAGAC | 3 cut(s) | 669, 1124, 1292 |
| BbvCI | CCTCAGC | 1 cut(s) | 923 |
| BbvI | GCAGC | 1 cut(s) | 1186 |
| BccI | CCATC | 6 cut(s) | 242, 296, 769, 995, 1202, 1718 |
| BceAI | ACGGC | 1 cut(s) | 1759 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1894, 1928 |
| BciT130I | CCWGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| BcoDI | GTCTC | 3 cut(s) | 413, 1327, 1930 |
| BfaI | CTAG | 5 cut(s) | 66, 371, 1548, 1764, 1851 |
| BfmI | CTRYAG | 1 cut(s) | 1638 |
| BfoI | RGCGCY | 1 cut(s) | 189 |
| BfrI | CTTAAG | 1 cut(s) | 1265 |
| BfuAI | ACCTGC | 2 cut(s) | 632, 1953 |
| BglII | AGATCT | 2 cut(s) | 755, 1642 |
| BisI | GCNGC | 2 cut(s) | 184, 1200 |
| BlsI | GCNGC | 2 cut(s) | 185, 1201 |
| Bme1390I | CCNGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| Bme18I | GGWCC | 2 cut(s) | 864, 927 |
| BmeT110I | CYCGRG | 1 cut(s) | 985 |
| BmgBI | CACGTC | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 3 cut(s) | 122, 864, 927 |
| BmrFI | CCNGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| BmrI | ACTGGG | 2 cut(s) | 870, 1290 |
| BmsI | GCATC | 5 cut(s) | 487, 734, 765, 968, 1280 |
| BmuI | ACTGGG | 2 cut(s) | 870, 1290 |
| BpiI | GAAGAC | 3 cut(s) | 669, 1124, 1292 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 410, 442 |
| BpmI | CTGGAG | 4 cut(s) | 53, 130, 1101, 1509 |
| Bpu10I | CCTNAGC | 1 cut(s) | 923 |
| BpuEI | CTTGAG | 3 cut(s) | 276, 412, 1603 |
| Bsa29I | ATCGAT | 1 cut(s) | 1784 |
| BsaBI | GATNNNNATC | 2 cut(s) | 612, 760 |
| BsaI | GGTCTC | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 118, 719, 984 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 212, 242, 569, 599 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 84, 429, 655, 1239, 1540, 1568, 1630 |
| Bse118I | RCCGGY | 2 cut(s) | 77, 99 |
| Bse1I | ACTGG | 8 cut(s) | 680, 865, 1258, 1296, 1492, 1504, 1610, 1837 |
| Bse8I | GATNNNNATC | 2 cut(s) | 612, 760 |
| BseBI | CCWGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| BseCI | ATCGAT | 1 cut(s) | 1784 |
| BseDI | CCNNGG | 4 cut(s) | 30, 118, 719, 984 |
| BseGI | GGATG | 6 cut(s) | 253, 691, 780, 886, 1006, 1807 |
| BseJI | GATNNNNATC | 2 cut(s) | 612, 760 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 84, 429, 655, 1239, 1540, 1568, 1630 |
| BseMII | CTCAG | 6 cut(s) | 352, 743, 914, 1238, 1455, 1954 |
| BseNI | ACTGG | 8 cut(s) | 680, 865, 1258, 1296, 1492, 1504, 1610, 1837 |
| BseRI | GAGGAG | 3 cut(s) | 220, 223, 595 |
| BseSI | GKGCMC | 1 cut(s) | 712 |
| BseX3I | CGGCCG | 1 cut(s) | 101 |
| BseXI | GCAGC | 1 cut(s) | 1186 |
| BseYI | CCCAGC | 3 cut(s) | 188, 361, 1887 |
| BsgI | GTGCAG | 1 cut(s) | 610 |
| Bsh1285I | CGRYCG | 3 cut(s) | 100, 104, 902 |
| BshFI | GGCC | 4 cut(s) | 5, 103, 123, 1859 |
| BshNI | GGYRCC | 2 cut(s) | 80, 1774 |
| BshVI | ATCGAT | 1 cut(s) | 1784 |
| BsiEI | CGRYCG | 3 cut(s) | 100, 104, 902 |
| BsiHKCI | CYCGRG | 1 cut(s) | 985 |
| BsiSI | CCGG | 3 cut(s) | 78, 100, 1157 |
| BsiWI | CGTACG | 1 cut(s) | 93 |
| BslFI | GGGAC | 4 cut(s) | 22, 337, 860, 913 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 84, 429, 655, 1239, 1540, 1568, 1630 |
| BsmAI | GTCTC | 3 cut(s) | 413, 1327, 1930 |
| BsmFI | GGGAC | 4 cut(s) | 22, 337, 860, 913 |
| BsmI | GAATGC | 1 cut(s) | 1234 |
| BsnI | GGCC | 4 cut(s) | 5, 103, 123, 1859 |
| Bso31I | GGTCTC | 1 cut(s) | 413 |
| BsoBI | CYCGRG | 1 cut(s) | 985 |
| Bsp1286I | GDGCHC | 2 cut(s) | 360, 712 |
| Bsp143I | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| Bsp19I | CCATGG | 1 cut(s) | 719 |
| BspACI | CCGC | 7 cut(s) | 48, 61, 183, 540, 706, 1386, 1557 |
| BspANI | GGCC | 4 cut(s) | 5, 103, 123, 1859 |
| BspCNI | CTCAG | 6 cut(s) | 351, 744, 915, 1237, 1454, 1953 |
| BspDI | ATCGAT | 1 cut(s) | 1784 |
| BspMI | ACCTGC | 2 cut(s) | 632, 1953 |
| BspPI | GGATC | 4 cut(s) | 12, 598, 621, 1510 |
| BspQI | GCTCTTC | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 2 cut(s) | 80, 1774 |
| BspTI | CTTAAG | 1 cut(s) | 1265 |
| BspTNI | GGTCTC | 1 cut(s) | 413 |
| BsrFI | RCCGGY | 2 cut(s) | 77, 99 |
| BsrI | ACTGG | 8 cut(s) | 680, 865, 1258, 1296, 1492, 1504, 1610, 1837 |
| BssAI | RCCGGY | 2 cut(s) | 77, 99 |
| BssECI | CCNNGG | 4 cut(s) | 30, 118, 719, 984 |
| BssMI | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2UI | CCWGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| Bst4CI | ACNGT | 4 cut(s) | 1125, 1369, 1651, 1690 |
| Bst6I | CTCTTC | 4 cut(s) | 229, 241, 371, 886 |
| BstAFI | CTTAAG | 1 cut(s) | 1265 |
| BstC8I | GCNNGC | 4 cut(s) | 181, 708, 1388, 1748 |
| BstDEI | CTNAG | 8 cut(s) | 338, 752, 923, 1044, 1224, 1234, 1441, 1940 |
| BstDSI | CCRYGG | 1 cut(s) | 719 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 427 |
| BstF5I | GGATG | 6 cut(s) | 253, 691, 780, 886, 1006, 1807 |
| BstH2I | RGCGCY | 1 cut(s) | 189 |
| BstHHI | GCGC | 1 cut(s) | 188 |
| BstKTI | GATC | 9 cut(s) | 20, 44, 593, 616, 758, 902, 1330, 1505, 1645 |
| BstMAI | GTCTC | 3 cut(s) | 413, 1327, 1930 |
| BstMBI | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| BstMCI | CGRYCG | 3 cut(s) | 100, 104, 902 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 185, 497, 703, 1888 |
| BstNI | CCWGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| BstNSI | RCATGY | 1 cut(s) | 395 |
| BstSCI | CCNGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| BstSFI | CTRYAG | 1 cut(s) | 1638 |
| BstSLI | GKGCMC | 1 cut(s) | 712 |
| BstV1I | GCAGC | 1 cut(s) | 1186 |
| BstV2I | GAAGAC | 3 cut(s) | 669, 1124, 1292 |
| BstX2I | RGATCY | 3 cut(s) | 17, 755, 1642 |
| BstYI | RGATCY | 3 cut(s) | 17, 755, 1642 |
| BstZI | CGGCCG | 1 cut(s) | 101 |
| Bsu15I | ATCGAT | 1 cut(s) | 1784 |
| BsuRI | GGCC | 4 cut(s) | 5, 103, 123, 1859 |
| BsuTUI | ATCGAT | 1 cut(s) | 1784 |
| BtgI | CCRYGG | 1 cut(s) | 719 |
| BtrI | CACGTC | 1 cut(s) | 713 |
| BtsCI | GGATG | 6 cut(s) | 253, 691, 780, 886, 1006, 1807 |
| BtsI | GCAGTG | 1 cut(s) | 486 |
| BtsIMutI | CAGTG | 6 cut(s) | 486, 687, 858, 1251, 1647, 1830 |
| BveI | ACCTGC | 2 cut(s) | 632, 1953 |
| Cac8I | GCNNGC | 4 cut(s) | 181, 708, 1388, 1748 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1882 |
| CfoI | GCGC | 1 cut(s) | 188 |
| Cfr10I | RCCGGY | 2 cut(s) | 77, 99 |
| Cfr13I | GGNCC | 3 cut(s) | 122, 864, 927 |
| ClaI | ATCGAT | 1 cut(s) | 1784 |
| Csp6I | GTAC | 5 cut(s) | 94, 252, 981, 1126, 1775 |
| CviQI | GTAC | 5 cut(s) | 94, 252, 981, 1126, 1775 |
| DdeI | CTNAG | 8 cut(s) | 338, 752, 923, 1044, 1224, 1234, 1441, 1940 |
| DpnI | GATC | 9 cut(s) | 19, 43, 592, 615, 757, 901, 1329, 1504, 1644 |
| DpnII | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| EaeI | YGGCCR | 3 cut(s) | 3, 101, 1857 |
| EagI | CGGCCG | 1 cut(s) | 101 |
| Eam1104I | CTCTTC | 4 cut(s) | 229, 241, 371, 886 |
| EarI | CTCTTC | 4 cut(s) | 229, 241, 371, 886 |
| EciI | GGCGGA | 2 cut(s) | 50, 63 |
| EclXI | CGGCCG | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco24I | GRGCYC | 1 cut(s) | 360 |
| Eco31I | GGTCTC | 1 cut(s) | 413 |
| Eco47I | GGWCC | 2 cut(s) | 864, 927 |
| Eco52I | CGGCCG | 1 cut(s) | 101 |
| Eco57I | CTGAAG | 4 cut(s) | 225, 513, 681, 1296 |
| Eco88I | CYCGRG | 1 cut(s) | 985 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 427 |
| EcoO109I | RGGNCCY | 2 cut(s) | 864, 927 |
| EcoRI | GAATTC | 2 cut(s) | 1048, 1894 |
| EcoRII | CCWGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| EcoT38I | GRGCYC | 1 cut(s) | 360 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1498, 1530 |
| FaqI | GGGAC | 4 cut(s) | 22, 337, 860, 913 |
| FauI | CCCGC | 2 cut(s) | 699, 1379 |
| FblI | GTMKAC | 2 cut(s) | 522, 827 |
| Fnu4HI | GCNGC | 2 cut(s) | 184, 1200 |
| FokI | GGATG | 6 cut(s) | 260, 698, 787, 893, 1013, 1814 |
| FriOI | GRGCYC | 1 cut(s) | 360 |
| Fsp4HI | GCNGC | 2 cut(s) | 184, 1200 |
| FspBI | CTAG | 5 cut(s) | 66, 371, 1548, 1764, 1851 |
| GlaI | GCGC | 1 cut(s) | 187 |
| GluI | GCNGC | 2 cut(s) | 184, 1200 |
| GsaI | CCCAGC | 3 cut(s) | 192, 365, 1891 |
| GsuI | CTGGAG | 4 cut(s) | 53, 130, 1101, 1509 |
| HaeII | RGCGCY | 1 cut(s) | 189 |
| HaeIII | GGCC | 4 cut(s) | 5, 103, 123, 1859 |
| HapII | CCGG | 3 cut(s) | 78, 100, 1157 |
| HhaI | GCGC | 1 cut(s) | 188 |
| Hin6I | GCGC | 1 cut(s) | 186 |
| HinP1I | GCGC | 1 cut(s) | 186 |
| HincII | GTYRAC | 1 cut(s) | 1248 |
| HindII | GTYRAC | 1 cut(s) | 1248 |
| HindIII | AAGCTT | 1 cut(s) | 1143 |
| HpaI | GTTAAC | 1 cut(s) | 1248 |
| HpaII | CCGG | 3 cut(s) | 78, 100, 1157 |
| HphI | GGTGA | 3 cut(s) | 669, 1388, 1606 |
| Hpy166II | GTNNAC | 5 cut(s) | 523, 677, 828, 1248, 1301 |
| Hpy188III | TCNNGA | 9 cut(s) | 15, 21, 39, 293, 330, 468, 1080, 1184, 1506 |
| Hpy8I | GTNNAC | 5 cut(s) | 523, 677, 828, 1248, 1301 |
| Hpy99I | CGWCG | 2 cut(s) | 263, 1916 |
| HpyCH4III | ACNGT | 4 cut(s) | 1125, 1369, 1651, 1690 |
| HpyCH4IV | ACGT | 2 cut(s) | 712, 1091 |
| HpyCH4V | TGCA | 8 cut(s) | 415, 500, 627, 778, 959, 1061, 1135, 1202 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 185, 497, 703, 1888 |
| HpyF3I | CTNAG | 8 cut(s) | 338, 752, 923, 1044, 1224, 1234, 1441, 1940 |
| HpySE526I | ACGT | 2 cut(s) | 712, 1091 |
| HspAI | GCGC | 1 cut(s) | 186 |
| KpnI | GGTACC | 1 cut(s) | 1778 |
| KspAI | GTTAAC | 1 cut(s) | 1248 |
| Kzo9I | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| LguI | GCTCTTC | 1 cut(s) | 371 |
| LmnI | GCTCC | 5 cut(s) | 355, 1106, 1297, 1841, 1879 |
| Lsp1109I | GCAGC | 1 cut(s) | 1186 |
| LweI | GCATC | 5 cut(s) | 487, 734, 765, 968, 1280 |
| MaeI | CTAG | 5 cut(s) | 66, 371, 1548, 1764, 1851 |
| MaeII | ACGT | 2 cut(s) | 712, 1091 |
| MaeIII | GTNAC | 7 cut(s) | 550, 1084, 1495, 1612, 1804, 1825, 1965 |
| MalI | GATC | 9 cut(s) | 19, 43, 592, 615, 757, 901, 1329, 1504, 1644 |
| MboI | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| MfeI | CAATTG | 2 cut(s) | 807, 1203 |
| MflI | RGATCY | 3 cut(s) | 17, 755, 1642 |
| MhlI | GDGCHC | 2 cut(s) | 360, 712 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 7 cut(s) | 44, 81, 82, 215, 480, 842, 1932 |
| MmeI | TCCRAC | 1 cut(s) | 1429 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 8 cut(s) | 449, 462, 632, 738, 1247, 1266, 1305, 1593 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 2 cut(s) | 183, 548 |
| MspCI | CTTAAG | 1 cut(s) | 1265 |
| MspI | CCGG | 3 cut(s) | 78, 100, 1157 |
| MspR9I | CCNGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| MunI | CAATTG | 2 cut(s) | 807, 1203 |
| Mva1269I | GAATGC | 1 cut(s) | 1234 |
| MvaI | CCWGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 185, 497, 703, 1888 |
| NcoI | CCATGG | 1 cut(s) | 719 |
| NdeII | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| NmeAIII | GCCGAG | 1 cut(s) | 129 |
| NmuCI | GTSAC | 4 cut(s) | 1495, 1612, 1804, 1965 |
| NspI | RCATGY | 1 cut(s) | 395 |
| PciSI | GCTCTTC | 1 cut(s) | 371 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 895 |
| PctI | GAATGC | 1 cut(s) | 1234 |
| PfeI | GAWTC | 4 cut(s) | 608, 1187, 1454, 1781 |
| Pfl23II | CGTACG | 1 cut(s) | 93 |
| PfoI | TCCNGGA | 2 cut(s) | 866, 876 |
| PkrI | GCNGC | 2 cut(s) | 185, 1201 |
| Ple19I | CGATCG | 1 cut(s) | 902 |
| PleI | GAGTC | 7 cut(s) | 43, 80, 82, 215, 479, 842, 1932 |
| PpsI | GAGTC | 7 cut(s) | 43, 80, 82, 215, 479, 842, 1932 |
| PpuMI | RGGWCCY | 2 cut(s) | 864, 927 |
| Psp5II | RGGWCCY | 2 cut(s) | 864, 927 |
| Psp6I | CCWGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| PspFI | CCCAGC | 3 cut(s) | 188, 361, 1887 |
| PspGI | CCWGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| PspLI | CGTACG | 1 cut(s) | 93 |
| PspPI | GGNCC | 3 cut(s) | 122, 864, 927 |
| PspPPI | RGGWCCY | 2 cut(s) | 864, 927 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 535, 567 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1882 |
| PsuI | RGATCY | 3 cut(s) | 17, 755, 1642 |
| PvuI | CGATCG | 1 cut(s) | 902 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RsaI | GTAC | 5 cut(s) | 95, 253, 982, 1127, 1776 |
| RsaNI | GTAC | 5 cut(s) | 94, 252, 981, 1126, 1775 |
| SapI | GCTCTTC | 1 cut(s) | 371 |
| SaqAI | TTAA | 8 cut(s) | 449, 462, 632, 738, 1247, 1266, 1305, 1593 |
| SatI | GCNGC | 2 cut(s) | 184, 1200 |
| Sau3AI | GATC | 9 cut(s) | 17, 41, 590, 613, 755, 899, 1327, 1502, 1642 |
| Sau96I | GGNCC | 3 cut(s) | 122, 864, 927 |
| SchI | GAGTC | 7 cut(s) | 44, 81, 82, 215, 480, 842, 1932 |
| ScrFI | CCNGG | 6 cut(s) | 32, 85, 120, 148, 868, 878 |
| SduI | GDGCHC | 2 cut(s) | 360, 712 |
| SfaNI | GCATC | 5 cut(s) | 487, 734, 765, 968, 1280 |
| SfcI | CTRYAG | 1 cut(s) | 1638 |
| SgrAI | CRCCGGYG | 1 cut(s) | 77 |
| SinI | GGWCC | 2 cut(s) | 864, 927 |
| SmlI | CTYRAG | 4 cut(s) | 291, 427, 1265, 1618 |
| SmoI | CTYRAG | 4 cut(s) | 291, 427, 1265, 1618 |
| SsiI | CCGC | 7 cut(s) | 48, 61, 183, 540, 706, 1386, 1557 |
| SspI | AATATT | 1 cut(s) | 1868 |
| SspMI | CTAG | 5 cut(s) | 66, 371, 1548, 1764, 1851 |
| StyD4I | CCNGG | 6 cut(s) | 30, 83, 118, 146, 866, 876 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 4 cut(s) | 1125, 1369, 1651, 1690 |
| TaiI | ACGT | 2 cut(s) | 715, 1094 |
| TaqI | TCGA | 4 cut(s) | 467, 902, 1692, 1784 |
| TauI | GCSGC | 1 cut(s) | 186 |
| TfiI | GAWTC | 4 cut(s) | 608, 1187, 1454, 1781 |
| Tru1I | TTAA | 8 cut(s) | 449, 462, 632, 738, 1247, 1266, 1305, 1593 |
| Tru9I | TTAA | 8 cut(s) | 449, 462, 632, 738, 1247, 1266, 1305, 1593 |
| TscAI | CASTG | 6 cut(s) | 493, 687, 865, 1258, 1654, 1837 |
| TseFI | GTSAC | 4 cut(s) | 1495, 1612, 1804, 1965 |
| TseI | GCWGC | 1 cut(s) | 1199 |
| Tsp45I | GTSAC | 4 cut(s) | 1495, 1612, 1804, 1965 |
| TspDTI | ATGAA | 6 cut(s) | 804, 897, 1082, 1298, 1725, 1878 |
| TspGWI | ACGGA | 2 cut(s) | 81, 569 |
| TspRI | CASTG | 6 cut(s) | 493, 687, 865, 1258, 1654, 1837 |
| Vha464I | CTTAAG | 1 cut(s) | 1265 |
| VpaK11BI | GGWCC | 2 cut(s) | 864, 927 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 427 |
| XapI | RAATTY | 4 cut(s) | 634, 1032, 1048, 1894 |
| XceI | RCATGY | 1 cut(s) | 395 |
| XmiI | GTMKAC | 2 cut(s) | 522, 827 |
| XspI | CTAG | 5 cut(s) | 66, 371, 1548, 1764, 1851 |