Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006515

Physical Location & Seq

Genomic Coordinates Reverse (-)

50257351 .. 50257851

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1206300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTCCCTCCACGTCGTCATCGCCGTCTGCCTCGTCATCGTTGCAACTTCGGTTCTCCCAGTACTCACCTCTCAAGATCTTGGAAAACGAGCGCCTGATCGAGAACAAGCGTCTGATCCGGTTCCCTGTGTTCTACGTGGCGGTGGCCAAGCTGATCTCAGCGCTTATAATGTCTCGATTTGGGAAGCATCTTCCTCCGGTGGTGAATACGTGGCCTGTGTTGGGAGGACTGCTCCGGTTCTTGAAAGGCCCCATTATCATGCTTTGTGAAGAGTATCCGAAGCTCTTGAGTGTGTTCACATTGAATCTTTTTAACAAGAAGATCACTTTCTTGATTGGTTCTGAGGTGTCTGCCCACTTCTTCAAGGCCTCGGAGGCTGATCTTAGCCAGCATGAGGTATACCAGTTCAATGTGTCCACTTTCGGCCCTGGAGTTGTTTTCGATGTGGATTACACAGTGAGACAGGAGCAGATCAAGGTTCTGCATACTCTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008398 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0032451 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070988 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

p450

Protein Analysis

167

Amino Acids

18.82

Weight (kDa)

9.59

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11680
fragaria_vesca	FvH4_4g22540 FvH4_4g22540
malus_domestica	MD00G1206300.v1.1 MD07G1091900.v1.1 MD13G1131600.v1.1 MD16G1141900.v1.1
prunus_persica	Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1
pyrus_communis	pycom16g11240
rosa_chinensis	RchiOBHm_Chr4g0428771
rosa_laevigata	RLG00000007128
rosa_multiflora	Rmu_sc0006510.1_g000004 Rmu_sc0018825.1_g000004 Rmu_sc0024131.1_g000003 Rmu_sc0037508.1_g000001 Rmu_sc0037509.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370440
rosa_rugosa	Rorug04G0228400
rosa_samantha	Rh4AG285700 Rh4BG291600 Rh4CG307400 Rh4DG288700
rosa_wichuraiana	Rw4G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	147
AfaI	GTAC	1 cut(s)	65
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	224, 397
AgsI	TTSAA	4 cut(s)	247, 307, 367, 412
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	154, 286
AluI	AGCT	2 cut(s)	154, 286
Alw26I	GTCTC	2 cut(s)	180, 457
AlwI	GGATC	1 cut(s)	112
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	5 cut(s)	147, 215, 250, 369, 427
AspLEI	GCGC	2 cut(s)	96, 166
AspS9I	GGNCC	2 cut(s)	251, 428
AsuHPI	GGTGA	2 cut(s)	60, 217
BalI	TGGCCA	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	180, 457
BfoI	RGCGCY	2 cut(s)	97, 167
BfuI	GTATCC	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	251, 428
BmiI	GGNNCC	2 cut(s)	125, 253
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	59, 310
BsaAI	YACGTR	2 cut(s)	139, 213
BsaJI	CCNNGG	2 cut(s)	372, 430
BsaWI	WCCGGW	3 cut(s)	120, 199, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 397
Bse1I	ACTGG	2 cut(s)	61, 406
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	372, 430
BseLI	CCNNNNNNNGG	2 cut(s)	224, 397
BseMII	CTCAG	2 cut(s)	174, 336
BseNI	ACTGG	2 cut(s)	61, 406
BshFI	GGCC	5 cut(s)	149, 217, 252, 371, 429
BsiSI	CCGG	3 cut(s)	121, 200, 238
BslI	CCNNNNNNNGG	2 cut(s)	224, 397
BsmAI	GTCTC	2 cut(s)	180, 457
BsnI	GGCC	5 cut(s)	149, 217, 252, 371, 429
Bsp143I	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	5 cut(s)	149, 217, 252, 371, 429
BspCNI	CTCAG	2 cut(s)	173, 337
BspLI	GGNNCC	2 cut(s)	125, 253
BspPI	GGATC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	61, 406
BssECI	CCNNGG	2 cut(s)	372, 430
BssMI	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
BssNAI	GTATAC	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	460, 498
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	2 cut(s)	139, 213
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	3 cut(s)	160, 345, 386
BstH2I	RGCGCY	2 cut(s)	97, 167
BstHHI	GCGC	2 cut(s)	96, 166
BstKTI	GATC	7 cut(s)	81, 102, 120, 159, 327, 385, 477
BstMAI	GTCTC	2 cut(s)	180, 457
BstMBI	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	5 cut(s)	149, 217, 252, 371, 429
BtgZI	GCGATG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	392
CfoI	GCGC	2 cut(s)	96, 166
Cfr13I	GGNCC	2 cut(s)	251, 428
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	262, 395
CviJI	RGCY	9 cut(s)	149, 154, 217, 252, 286, 371, 380, 390, 429
CviKI_1	RGCY	9 cut(s)	149, 154, 217, 252, 286, 371, 380, 390, 429
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	160, 345, 386
DpnI	GATC	7 cut(s)	80, 101, 119, 158, 326, 384, 476
DpnII	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	265, 398
FaiI	YATR	5 cut(s)	170, 263, 396, 403, 489
FatI	CATG	2 cut(s)	261, 394
FblI	GTMKAC	1 cut(s)	402
GlaI	GCGC	2 cut(s)	95, 165
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	2 cut(s)	97, 167
HaeIII	GGCC	5 cut(s)	149, 217, 252, 371, 429
HapII	CCGG	3 cut(s)	121, 200, 238
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	96, 166
Hin1II	CATG	2 cut(s)	265, 398
Hin6I	GCGC	2 cut(s)	94, 164
HinP1I	GCGC	2 cut(s)	94, 164
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	3 cut(s)	121, 200, 238
HphI	GGTGA	2 cut(s)	60, 217
Hpy166II	GTNNAC	3 cut(s)	300, 403, 420
Hpy188I	TCNGA	4 cut(s)	117, 282, 346, 376
Hpy188III	TCNNGA	6 cut(s)	76, 103, 177, 244, 289, 334
Hpy8I	GTNNAC	3 cut(s)	300, 403, 420
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	460, 498
HpyCH4IV	ACGT	3 cut(s)	14, 138, 212
HpyCH4V	TGCA	2 cut(s)	46, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	160, 345, 386
HpySE526I	ACGT	3 cut(s)	14, 138, 212
Hsp92II	CATG	2 cut(s)	265, 398
HspAI	GCGC	2 cut(s)	94, 164
Kzo9I	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
LmnI	GCTCC	2 cut(s)	240, 469
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	3 cut(s)	14, 138, 212
MalI	GATC	7 cut(s)	80, 101, 119, 158, 326, 384, 476
MboI	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
MboII	GAAGA	4 cut(s)	185, 284, 334, 355
MflI	RGATCY	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	121, 200, 238
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
NlaIII	CATG	2 cut(s)	265, 398
NlaIV	GGNNCC	2 cut(s)	125, 253
PceI	AGGCCT	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	307
Ppu21I	YACGTR	2 cut(s)	139, 213
PsiI	TTATAA	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	125, 253
PspPI	GGNCC	2 cut(s)	251, 428
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	7 cut(s)	78, 99, 117, 156, 324, 382, 474
Sau96I	GGNCC	2 cut(s)	251, 428
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	9 cut(s)	17, 73, 141, 156, 215, 288, 351, 402, 483
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	74, 289
SmoI	CTYRAG	2 cut(s)	74, 289
SseBI	AGGCCT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	460, 498
TaiI	ACGT	3 cut(s)	17, 141, 215
TaqI	TCGA	3 cut(s)	102, 178, 444
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	465
TspRI	CASTG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.