Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037509.1

Orthogroup ID

OG0006515

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1938

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

gaacagtttaggttctttacggaggctttgagggtgaataagctcaagggatatgtggatcagatggttacagaagcagaggattacttttccaagtggggagacagtggagaggtggacttgaagtatgagctggagcatctgattatcctgacagccagtagatgcctcctgggtcgtgaagttcgtgataaactctttgatgatgtttcgtctttgttccatgaacttgacaatggcatgcttcccattagtgtcattgccccatacctgcccatcccagctcaccgccgccgtgaccaggcacgcaagaagctcacagcaatctttgcaaacatcataaactcccgcagatgtgctgaagtgtctgagaatgacatgttgcaatatttcatcgagtctaagtacaaaaatggccgaaaaacaactgattctgagatcactggcttgctcattgctgctctctttgctgggcaacatacaagttcaatcacttccacttggactggggcttatctcctccagaataagcagtacctatctgccgtgtcagaggaacagaaaaggcttatggctaagcatgggaagaagattgaccatgatatattgtccgagatggatacactgtatcgttgcatcaaggaagctctgagactgcatcctccactgatcatgttgctgcgacactcgcatagcgatttcagcgtacaaactcgcgacgggaaagaatatgacatcccgaagggccacatagttgccacatcaccagcttttgccaaccgacttcctcatattttcaaaaacccagacagctatgatcctgatagatttgctgttggaagagaggaagacaaggccgcaggggccttctcatatatctcatttggaggtggcaggcatggatgcctcggagagccttttgcatacctgcagataaaggctatatggagccatttgctgaggaactttgaactggagctggtttcaccttttccagagacggattggaatgccatggttgtcggtgtgaaaggaaaggtgatggtgcggtataagcgaagggagctttcagctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008398 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0032451 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070988 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

p450

Protein Analysis

359

Amino Acids

41.05

Weight (kDa)

8.26

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11680
fragaria_vesca	FvH4_4g22540 FvH4_4g22540
malus_domestica	MD00G1206300.v1.1 MD07G1091900.v1.1 MD13G1131600.v1.1 MD16G1141900.v1.1
prunus_persica	Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1
pyrus_communis	pycom16g11240
rosa_chinensis	RchiOBHm_Chr4g0428771
rosa_laevigata	RLG00000007128
rosa_multiflora	Rmu_sc0006510.1_g000004 Rmu_sc0018825.1_g000004 Rmu_sc0024131.1_g000003 Rmu_sc0037508.1_g000001 Rmu_sc0037509.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370440
rosa_rugosa	Rorug04G0228400
rosa_samantha	Rh4AG285700 Rh4BG291600 Rh4CG307400 Rh4DG288700
rosa_wichuraiana	Rw4G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	279, 936
AccII	CGCG	1 cut(s)	717
AciI	CCGC	5 cut(s)	289, 292, 349, 858, 1048
AclWI	GGATC	2 cut(s)	66, 812
AcoI	YGGCCR	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	3 cut(s)	407, 536, 708
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	124, 489, 799, 971
AjnI	CCWGG	2 cut(s)	171, 300
Alw26I	GTCTC	3 cut(s)	96, 646, 992
AlwI	GGATC	2 cut(s)	66, 812
AoxI	GGCC	4 cut(s)	415, 745, 855, 864
ApeKI	GCWGC	2 cut(s)	458, 679
AspS9I	GGNCC	2 cut(s)	745, 864
AsuHPI	GGTGA	5 cut(s)	46, 278, 756, 978, 1051
BbsI	GAAGAC	1 cut(s)	855
BbvCI	CCTCAGC	1 cut(s)	959
BbvI	GCAGC	2 cut(s)	445, 666
BccI	CCATC	4 cut(s)	58, 284, 610, 1036
BceAI	ACGGC	2 cut(s)	279, 530
BciT130I	CCWGG	2 cut(s)	173, 302
BciVI	GTATCC	1 cut(s)	613
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	3 cut(s)	96, 646, 992
BfmI	CTRYAG	1 cut(s)	929
BfuAI	ACCTGC	2 cut(s)	279, 936
BfuI	GTATCC	1 cut(s)	613
BglI	GCCNNNNNGGC	1 cut(s)	863
BisI	GCNGC	4 cut(s)	292, 459, 680, 858
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	4 cut(s)	293, 460, 681, 859
Bme1390I	CCNGG	2 cut(s)	173, 302
BmgT120I	GGNCC	2 cut(s)	745, 864
BmiI	GGNNCC	2 cut(s)	865, 950
BmrFI	CCNGG	2 cut(s)	173, 302
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	5 cut(s)	148, 155, 645, 667, 893
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	3 cut(s)	155, 506, 995
Bpu10I	CCTNAGC	1 cut(s)	959
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	172, 907, 1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	4 cut(s)	159, 448, 511, 978
Bse3DI	GCAATG	2 cut(s)	258, 453
BseBI	CCWGG	2 cut(s)	173, 302
BseDI	CCNNGG	3 cut(s)	172, 907, 1014
BseGI	GGATG	4 cut(s)	276, 658, 735, 908
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	2 cut(s)	258, 453
BseMII	CTCAG	4 cut(s)	360, 426, 641, 950
BseNI	ACTGG	4 cut(s)	159, 448, 511, 978
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	445, 666
BseYI	CCCAGC	2 cut(s)	280, 470
Bsh1236I	CGCG	1 cut(s)	717
BshFI	GGCC	4 cut(s)	417, 747, 857, 866
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	3 cut(s)	96, 646, 992
BsmBI	CGTCTC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	4 cut(s)	417, 747, 857, 866
Bsp143I	GATC	4 cut(s)	58, 438, 669, 817
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	1 cut(s)	1014
Bsp68I	TCGCGA	1 cut(s)	717
BspACI	CCGC	5 cut(s)	289, 292, 349, 858, 1048
BspANI	GGCC	4 cut(s)	417, 747, 857, 866
BspCNI	CTCAG	4 cut(s)	361, 427, 642, 951
BspFNI	CGCG	1 cut(s)	717
BspLI	GGNNCC	2 cut(s)	865, 950
BspMAI	CTGCAG	1 cut(s)	933
BspMI	ACCTGC	2 cut(s)	279, 936
BspPI	GGATC	2 cut(s)	66, 812
BsrDI	GCAATG	2 cut(s)	258, 453
BsrI	ACTGG	4 cut(s)	159, 448, 511, 978
BssECI	CCNNGG	3 cut(s)	172, 907, 1014
BssMI	GATC	4 cut(s)	58, 438, 669, 817
BssT1I	CCWWGG	1 cut(s)	1014
Bst2UI	CCWGG	2 cut(s)	173, 302
Bst4CI	ACNGT	3 cut(s)	6, 107, 627
Bst6I	CTCTTC	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	242, 307, 449, 896
BstDEI	CTNAG	6 cut(s)	369, 402, 435, 576, 650, 959
BstDSI	CCRYGG	1 cut(s)	1014
BstF5I	GGATG	4 cut(s)	276, 658, 735, 908
BstFNI	CGCG	1 cut(s)	717
BstKTI	GATC	4 cut(s)	61, 441, 672, 820
BstMAI	GTCTC	3 cut(s)	96, 646, 992
BstMBI	GATC	4 cut(s)	58, 438, 669, 817
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 467, 688, 702, 863, 1054, 1063
BstNI	CCWGG	2 cut(s)	173, 302
BstNSI	RCATGY	2 cut(s)	244, 382
BstSCI	CCNGG	2 cut(s)	171, 300
BstSFI	CTRYAG	1 cut(s)	929
BstUI	CGCG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	445, 666
BstV2I	GAAGAC	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	417, 747, 857, 866
BtgI	CCRYGG	1 cut(s)	1014
BtsCI	GGATG	4 cut(s)	276, 658, 735, 908
BtsIMutI	CAGTG	4 cut(s)	112, 441, 623, 665
BtuMI	TCGCGA	1 cut(s)	717
BveI	ACCTGC	2 cut(s)	279, 936
Cac8I	GCNNGC	4 cut(s)	242, 307, 449, 896
Cfr13I	GGNCC	2 cut(s)	745, 864
Csp6I	GTAC	3 cut(s)	406, 535, 707
CviAII	CATG	8 cut(s)	224, 241, 379, 581, 599, 673, 899, 1015
CviQI	GTAC	3 cut(s)	406, 535, 707
DdeI	CTNAG	6 cut(s)	369, 402, 435, 576, 650, 959
DpnI	GATC	4 cut(s)	60, 440, 671, 819
DpnII	GATC	4 cut(s)	58, 438, 669, 817
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	1014
Eco57I	CTGAAG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	171, 300
EcoT14I	CCWWGG	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1014
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	8 cut(s)	227, 244, 382, 584, 602, 676, 902, 1018
FatI	CATG	8 cut(s)	223, 240, 378, 580, 598, 672, 898, 1014
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	292, 459, 680, 858
FokI	GGATG	4 cut(s)	263, 645, 722, 915
Fsp4HI	GCNGC	4 cut(s)	292, 459, 680, 858
GluI	GCNGC	4 cut(s)	292, 459, 680, 858
GsaI	CCCAGC	2 cut(s)	284, 474
GsuI	CTGGAG	3 cut(s)	155, 506, 995
HaeIII	GGCC	4 cut(s)	417, 747, 857, 866
Hin1II	CATG	8 cut(s)	227, 244, 382, 584, 602, 676, 902, 1018
HinfI	GANTC	2 cut(s)	398, 431
HphI	GGTGA	5 cut(s)	46, 278, 756, 978, 1051
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	8 cut(s)	63, 144, 370, 436, 553, 613, 651, 911
Hpy188III	TCNNGA	8 cut(s)	151, 179, 188, 523, 716, 739, 821, 995
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	736, 877, 1053
HpyCH4III	ACNGT	3 cut(s)	6, 107, 627
HpyCH4V	TGCA	6 cut(s)	332, 385, 636, 658, 923, 931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 467, 688, 702, 863, 1054, 1063
HpyF3I	CTNAG	6 cut(s)	369, 402, 435, 576, 650, 959
Hsp92II	CATG	8 cut(s)	227, 244, 382, 584, 602, 676, 902, 1018
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	58, 438, 669, 817
LmnI	GCTCC	4 cut(s)	136, 948, 976, 1063
Lsp1109I	GCAGC	2 cut(s)	445, 666
LweI	GCATC	5 cut(s)	148, 155, 645, 667, 893
MaeIII	GTNAC	2 cut(s)	67, 296
MalI	GATC	4 cut(s)	60, 440, 671, 819
MboI	GATC	4 cut(s)	58, 438, 669, 817
MboII	GAAGA	4 cut(s)	598, 601, 852, 860
MluCI	AATT	1 cut(s)	1075
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	817
MseI	TTAA	1 cut(s)	1078
MspR9I	CCNGG	2 cut(s)	173, 302
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	2 cut(s)	173, 302
MvnI	CGCG	1 cut(s)	717
MwoI	GCNNNNNNNGC	7 cut(s)	329, 467, 688, 702, 863, 1054, 1063
NcoI	CCATGG	1 cut(s)	1014
NdeII	GATC	4 cut(s)	58, 438, 669, 817
NlaIII	CATG	8 cut(s)	227, 244, 382, 584, 602, 676, 902, 1018
NlaIV	GGNNCC	2 cut(s)	865, 950
NmuCI	GTSAC	1 cut(s)	296
NruI	TCGCGA	1 cut(s)	717
NspI	RCATGY	2 cut(s)	244, 382
PaeI	GCATGC	1 cut(s)	244
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	293, 460, 681, 859
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	171, 300
PspFI	CCCAGC	2 cut(s)	280, 470
PspGI	CCWGG	2 cut(s)	171, 300
PspN4I	GGNNCC	2 cut(s)	865, 950
PspPI	GGNCC	2 cut(s)	745, 864
PstI	CTGCAG	1 cut(s)	933
RruI	TCGCGA	1 cut(s)	717
RsaI	GTAC	3 cut(s)	407, 536, 708
RsaNI	GTAC	3 cut(s)	406, 535, 707
SaqAI	TTAA	1 cut(s)	1078
SatI	GCNGC	4 cut(s)	292, 459, 680, 858
Sau3AI	GATC	4 cut(s)	58, 438, 669, 817
Sau96I	GGNCC	2 cut(s)	745, 864
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	173, 302
SfaNI	GCATC	5 cut(s)	148, 155, 645, 667, 893
SfcI	CTRYAG	1 cut(s)	929
SfiI	GGCCNNNNNGGCC	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	1075
SsiI	CCGC	5 cut(s)	289, 292, 349, 858, 1048
SspI	AATATT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	171, 300
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	3 cut(s)	6, 107, 627
TaqI	TCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	1075
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	2 cut(s)	294, 860
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	1078
Tru9I	TTAA	1 cut(s)	1078
TscAI	CASTG	4 cut(s)	112, 448, 630, 672
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	458, 679
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	240, 382
TspGWI	ACGGA	2 cut(s)	35, 1016
TspRI	CASTG	4 cut(s)	112, 448, 630, 672
XceI	RCATGY	2 cut(s)	244, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.