MD16G1141900.v1.1

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10927526 .. 10930511
2986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1141900.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGGTGACAATGGATATGGATAACAAGCTTTTCAGTGTGGGGCTGATGATTTTGGCCACTCTGGTGGTGGCCAAGCTGATCTCAGCGCTTATAATGTCTCGATCCGGGAAGCGTCTTCCTCCGGTGGTGAATACGTGGCCTGTGTTGGGAGGACTGCTCCGGTTCTTGAAAGGCCCCATTATCATGCTTCGTGAAGAGTACCCGAAGCTCGGGAGTGTGTTCACATTGAATCTGCTTAACAAGAAGATCACTTTCTTGATTGGTCCTGAGGTTTCTGCCCACTTCTTCAAGGCCTCGGAGGCTGATCTTAGCCAGCAGGAGGTATACCAGTTCAATGTGCCCACTTTCGGCCCTGGAGTTGTGTTCGATGTGGATTACACGGTGAGACAGGAGCAGTTTAGGTTCTTCACGGAGGCTCTCAGGGTAAATAAGCTTAAGGGATATGTGGATCAGATGGTTACAGAAGCAGAGGATTACTTTTCCAAGTGGGGAGACAGTGGCGAGGTGGACTTAAAATATGAGCTGGAGCATCTGATCATATTGACCGCCAGCAGATGCCTTTTGGGTCGAGAAGTTCGTAATAAGCTCTTTGATGATGTTTCCGCATTGTTCCATGACCTTGACAATGGCATGCTTCCTATCAGTGTCATCTTCCCATACCTTCCCATCCCAGCTCACCGCCGCCGTGACCAGGCCCGAAAGAAGCTTTCAGATATCTTTGCAGAGATCATAAATTCCCGTAAGCGTGCTGCACAGTCTGAGAATGACATGTTGCAATGCTTCATTGACTCAAAGTACAAAAATGGCCGACCAACAACTGAATCTGAGGTCACTGGCTTGCTCATTGCTGCTCTCTTTGCTGGGCAACACACTAGCTCTATCACTTCCACTTGGACCGGGGCCTATCTCCTCCGTCACAAGGAGTTCTTATCTGCTGTGTCAGAGGAGCAGAAAAACATAATGAAAAAGCATGGAAAGAAGGTTGATCATGATATACTGGCAGAGATGGATGTCCTGTATCGTTGCATCAAGGAAGCTCTCAGATTGCACCCTCCACTGATCATTCTGCTGCGAAGCTCGCATAGTGATTTCAGCGTAAAAACCCGCGAGGGGAAGGAGTATGATATCCCGAAGGGGCACATAGTAGCCGCGTCACCATCTTTTGCCAACCGGCTTCCTCATATTTACAAGGAGCCAGACACCTACGATCCTGATAGATTTGCTGCTGGGAGAGAAGAAGACAAGTCAGCAGGGGCATTCTCATACATCTCGTTTGGAGGTGGCAGGCATGGATGCCTTGGTGAGCCTTTTGCATACCTGCAAATAAAGGCTATATGGAGCCACCTGCTAAGAAATTTTGAACTGGAGCTGGTATCGCCATTTCCCGAGACGGATTGGAATGCCATGGTTGTGGGTGTGAAAGGAAAGGTGATGGTGCGGTACAAGCGTCGGGAGCTTTCAGTTGAATAA

Protein Analysis

490

Amino Acids

55.53

Weight (kDa)

8.6

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 458 5.2e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AarI CACCTGC 1 cut(s) 1353
Acc36I ACCTGC 2 cut(s) 1326, 1353
AccI GTMKAC 1 cut(s) 324
AccII CGCG 2 cut(s) 1107, 1151
AciI CCGC 7 cut(s) 546, 603, 679, 682, 1105, 1149, 1438
AclWI GGATC 3 cut(s) 96, 456, 1202
AcoI YGGCCR 3 cut(s) 54, 69, 805
AcsI RAATTY 2 cut(s) 733, 1354
AfaI GTAC 3 cut(s) 200, 797, 1442
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 7 cut(s) 146, 209, 319, 347, 691, 919, 1110
AflII CTTAAG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 6 cut(s) 169, 229, 289, 334, 1361, 1466
AjnI CCWGG 2 cut(s) 352, 690
AleI CACNNNNGTG 1 cut(s) 62
Alw26I GTCTC 4 cut(s) 102, 379, 486, 1382
AlwI GGATC 3 cut(s) 96, 456, 1202
Ama87I CYCGRG 2 cut(s) 209, 1385
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 9 cut(s) 54, 69, 137, 172, 291, 349, 693, 805, 900
ApeKI GCWGC 4 cut(s) 749, 848, 1069, 1223
ApoI RAATTY 2 cut(s) 733, 1354
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 6 cut(s) 173, 263, 350, 694, 894, 900
AsuC2I CCSGG 2 cut(s) 106, 898
AsuHPI GGTGA 7 cut(s) 16, 139, 394, 668, 1146, 1313, 1441
AvaI CYCGRG 2 cut(s) 209, 1385
AvaII GGWCC 2 cut(s) 263, 894
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 2 cut(s) 342, 1140
BaeI ACNNNNGTAYC 2 cut(s) 1432, 1465
BalI TGGCCA 2 cut(s) 56, 71
BbsI GAAGAC 2 cut(s) 107, 1245
BbvI GCAGC 4 cut(s) 736, 835, 1056, 1210
BccI CCATC 5 cut(s) 448, 674, 1000, 1165, 1426
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 2 cut(s) 354, 692
BclI TGATCA 3 cut(s) 534, 985, 1059
BcnI CCSGG 2 cut(s) 106, 898
BcoDI GTCTC 4 cut(s) 102, 379, 486, 1382
BfaI CTAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 2 cut(s) 1326, 1353
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 6 cut(s) 682, 750, 849, 1070, 1149, 1224
BlsI GCNGC 6 cut(s) 683, 751, 850, 1071, 1150, 1225
Bme1390I CCNGG 4 cut(s) 106, 354, 692, 898
Bme18I GGWCC 2 cut(s) 263, 894
BmeT110I CYCGRG 2 cut(s) 209, 1385
BmgT120I GGNCC 6 cut(s) 173, 263, 350, 694, 894, 900
BmiI GGNNCC 4 cut(s) 175, 901, 1194, 1340
BmrFI CCNGG 4 cut(s) 106, 354, 692, 898
BmsI GCATC 4 cut(s) 538, 545, 1035, 1283
BpiI GAAGAC 2 cut(s) 107, 1245
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 3 cut(s) 375, 545, 1385
BpuMI CCSGG 2 cut(s) 106, 898
BsaAI YACGTR 1 cut(s) 135
BsaJI CCNNGG 5 cut(s) 294, 352, 897, 1297, 1404
BsaWI WCCGGW 2 cut(s) 121, 159
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 209, 319, 347, 691, 919, 1110
Bse118I RCCGGY 1 cut(s) 1170
Bse1I ACTGG 4 cut(s) 328, 838, 1002, 1368
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 2 cut(s) 782, 843
BseBI CCWGG 2 cut(s) 354, 692
BseDI CCNNGG 5 cut(s) 294, 352, 897, 1297, 1404
BseGI GGATG 3 cut(s) 666, 1015, 1298
BseLI CCNNNNNNNGG 7 cut(s) 146, 209, 319, 347, 691, 919, 1110
BseMI GCAATG 2 cut(s) 782, 843
BseMII CTCAG 6 cut(s) 96, 258, 433, 750, 816, 1054
BseNI ACTGG 4 cut(s) 328, 838, 1002, 1368
BseRI GAGGAG 2 cut(s) 899, 959
BseSI GKGCMC 2 cut(s) 342, 1140
BseXI GCAGC 4 cut(s) 736, 835, 1056, 1210
BseYI CCCAGC 3 cut(s) 670, 860, 1226
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 2 cut(s) 1107, 1151
BshFI GGCC 9 cut(s) 56, 71, 139, 174, 293, 351, 695, 807, 902
BsiHKCI CYCGRG 2 cut(s) 209, 1385
BsiSI CCGG 5 cut(s) 105, 122, 160, 897, 1171
BslI CCNNNNNNNGG 7 cut(s) 146, 209, 319, 347, 691, 919, 1110
BsmAI GTCTC 4 cut(s) 102, 379, 486, 1382
BsmBI CGTCTC 1 cut(s) 1382
BsmI GAATGC 2 cut(s) 1256, 1405
BsnI GGCC 9 cut(s) 56, 71, 139, 174, 293, 351, 695, 807, 902
BsoBI CYCGRG 2 cut(s) 209, 1385
Bsp1286I GDGCHC 2 cut(s) 342, 1140
Bsp19I CCATGG 1 cut(s) 1404
BspACI CCGC 7 cut(s) 546, 603, 679, 682, 1105, 1149, 1438
BspANI GGCC 9 cut(s) 56, 71, 139, 174, 293, 351, 695, 807, 902
BspCNI CTCAG 6 cut(s) 95, 259, 432, 751, 817, 1053
BspFNI CGCG 2 cut(s) 1107, 1151
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 4 cut(s) 175, 901, 1194, 1340
BspMI ACCTGC 2 cut(s) 1326, 1353
BspPI GGATC 3 cut(s) 96, 456, 1202
BspTI CTTAAG 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 782, 843
BsrFI RCCGGY 1 cut(s) 1170
BsrI ACTGG 4 cut(s) 328, 838, 1002, 1368
BssAI RCCGGY 1 cut(s) 1170
BssECI CCNNGG 5 cut(s) 294, 352, 897, 1297, 1404
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 1297, 1404
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 354, 692
Bst4CI ACNGT 3 cut(s) 382, 497, 756
Bst6I CTCTTC 1 cut(s) 189
BstAFI CTTAAG 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 7 cut(s) 314, 550, 632, 747, 839, 1079, 1286
BstDEI CTNAG 8 cut(s) 82, 267, 308, 419, 759, 825, 1040, 1349
BstDSI CCRYGG 1 cut(s) 1404
BstF5I GGATG 3 cut(s) 666, 1015, 1298
BstFNI CGCG 2 cut(s) 1107, 1151
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstMAI GTCTC 4 cut(s) 102, 379, 486, 1382
BstMWI GCNNNNNNNGC 6 cut(s) 299, 857, 1078, 1375, 1444, 1453
BstNI CCWGG 2 cut(s) 354, 692
BstNSI RCATGY 2 cut(s) 634, 772
BstSCI CCNGG 4 cut(s) 104, 352, 690, 896
BstSLI GKGCMC 2 cut(s) 342, 1140
BstUI CGCG 2 cut(s) 1107, 1151
BstV1I GCAGC 4 cut(s) 736, 835, 1056, 1210
BstV2I GAAGAC 2 cut(s) 107, 1245
BstXI CCANNNNNNTGG 2 cut(s) 64, 1411
BstZ17I GTATAC 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 9 cut(s) 56, 71, 139, 174, 293, 351, 695, 807, 902
BtgI CCRYGG 1 cut(s) 1404
BtsCI GGATG 3 cut(s) 666, 1015, 1298
BtsIMutI CAGTG 5 cut(s) 40, 502, 649, 831, 1055
BveI ACCTGC 2 cut(s) 1326, 1353
Cac8I GCNNGC 7 cut(s) 314, 550, 632, 747, 839, 1079, 1286
CciI TCATGA 1 cut(s) 988
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 1170
Cfr13I GGNCC 6 cut(s) 173, 263, 350, 694, 894, 900
CseI GACGC 3 cut(s) 101, 1140, 1436
Csp6I GTAC 3 cut(s) 199, 796, 1441
CviAII CATG 8 cut(s) 184, 614, 631, 769, 971, 989, 1289, 1405
CviQI GTAC 3 cut(s) 199, 796, 1441
DdeI CTNAG 8 cut(s) 82, 267, 308, 419, 759, 825, 1040, 1349
EaeI YGGCCR 3 cut(s) 54, 69, 805
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 1297, 1404
Eco147I AGGCCT 1 cut(s) 293
Eco32I GATATC 2 cut(s) 715, 1126
Eco47I GGWCC 2 cut(s) 263, 894
Eco47III AGCGCT 1 cut(s) 87
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 2 cut(s) 209, 1385
EcoO109I RGGNCCY 2 cut(s) 173, 900
EcoRII CCWGG 2 cut(s) 352, 690
EcoRV GATATC 2 cut(s) 715, 1126
EcoT14I CCWWGG 2 cut(s) 1297, 1404
ErhI CCWWGG 2 cut(s) 1297, 1404
Esp3I CGTCTC 1 cut(s) 1382
FaeI CATG 8 cut(s) 187, 617, 634, 772, 974, 992, 1292, 1408
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FatI CATG 8 cut(s) 183, 613, 630, 768, 970, 988, 1288, 1404
FauI CCCGC 1 cut(s) 1112
FbaI TGATCA 3 cut(s) 534, 985, 1059
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 6 cut(s) 682, 750, 849, 1070, 1149, 1224
FokI GGATG 3 cut(s) 653, 1022, 1305
Fsp4HI GCNGC 6 cut(s) 682, 750, 849, 1070, 1149, 1224
FspBI CTAG 1 cut(s) 873
GlaI GCGC 1 cut(s) 87
GluI GCNGC 6 cut(s) 682, 750, 849, 1070, 1149, 1224
GsaI CCCAGC 3 cut(s) 674, 864, 1230
GsuI CTGGAG 3 cut(s) 375, 545, 1385
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 9 cut(s) 56, 71, 139, 174, 293, 351, 695, 807, 902
HapII CCGG 5 cut(s) 105, 122, 160, 897, 1171
HgaI GACGC 3 cut(s) 101, 1140, 1436
HhaI GCGC 1 cut(s) 88
Hin1II CATG 8 cut(s) 187, 617, 634, 772, 974, 992, 1292, 1408
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 3 cut(s) 26, 431, 704
HinfI GANTC 3 cut(s) 229, 788, 821
HpaII CCGG 5 cut(s) 105, 122, 160, 897, 1171
HphI GGTGA 7 cut(s) 16, 139, 394, 668, 1146, 1313, 1441
Hpy166II GTNNAC 3 cut(s) 222, 325, 508
Hpy188I TCNGA 8 cut(s) 298, 453, 534, 712, 760, 826, 943, 1043
Hpy8I GTNNAC 3 cut(s) 222, 325, 508
Hpy99I CGWCG 1 cut(s) 1452
HpyAV CCTTC 4 cut(s) 671, 973, 1108, 1126
HpyCH4III ACNGT 3 cut(s) 382, 497, 756
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 7 cut(s) 722, 752, 775, 1026, 1048, 1313, 1321
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 857, 1078, 1375, 1444, 1453
HpyF3I CTNAG 8 cut(s) 82, 267, 308, 419, 759, 825, 1040, 1349
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 8 cut(s) 187, 617, 634, 772, 974, 992, 1292, 1408
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 3 cut(s) 534, 985, 1059
LmnI GCTCC 8 cut(s) 162, 391, 526, 946, 1192, 1338, 1366, 1453
Lsp1109I GCAGC 4 cut(s) 736, 835, 1056, 1210
LweI GCATC 4 cut(s) 538, 545, 1035, 1283
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 6 cut(s) 4, 457, 686, 829, 914, 1152
MboII GAAGA 8 cut(s) 107, 206, 256, 277, 397, 643, 1247, 1250
MhlI GDGCHC 2 cut(s) 342, 1140
MlsI TGGCCA 2 cut(s) 56, 71
MluCI AATT 2 cut(s) 733, 1354
MluNI TGGCCA 2 cut(s) 56, 71
MlyI GAGTC 1 cut(s) 782
Mox20I TGGCCA 2 cut(s) 56, 71
MscI TGGCCA 2 cut(s) 56, 71
MseI TTAA 3 cut(s) 237, 435, 512
MslI CAYNNNNRTG 3 cut(s) 62, 182, 1409
Msp20I TGGCCA 2 cut(s) 56, 71
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 5 cut(s) 105, 122, 160, 897, 1171
MspR9I CCNGG 4 cut(s) 106, 354, 692, 898
Mva1269I GAATGC 2 cut(s) 1256, 1405
MvaI CCWGG 2 cut(s) 354, 692
MvnI CGCG 2 cut(s) 1107, 1151
MwoI GCNNNNNNNGC 6 cut(s) 299, 857, 1078, 1375, 1444, 1453
NciI CCSGG 2 cut(s) 106, 898
NcoI CCATGG 1 cut(s) 1404
NlaIII CATG 8 cut(s) 187, 617, 634, 772, 974, 992, 1292, 1408
NlaIV GGNNCC 4 cut(s) 175, 901, 1194, 1340
NmuCI GTSAC 5 cut(s) 4, 686, 829, 914, 1152
NspI RCATGY 2 cut(s) 634, 772
OliI CACNNNNGTG 1 cut(s) 62
PaeI GCATGC 1 cut(s) 634
PagI TCATGA 1 cut(s) 988
PaqCI CACCTGC 1 cut(s) 1353
PceI AGGCCT 1 cut(s) 293
PciI ACATGT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 2 cut(s) 1256, 1405
PfeI GAWTC 2 cut(s) 229, 821
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 6 cut(s) 683, 751, 850, 1071, 1150, 1225
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
Ppu21I YACGTR 1 cut(s) 135
PscI ACATGT 1 cut(s) 768
PsiI TTATAA 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 352, 690
PspFI CCCAGC 3 cut(s) 670, 860, 1226
PspGI CCWGG 2 cut(s) 352, 690
PspN4I GGNNCC 4 cut(s) 175, 901, 1194, 1340
PspPI GGNCC 6 cut(s) 173, 263, 350, 694, 894, 900
RsaI GTAC 3 cut(s) 200, 797, 1442
RsaNI GTAC 3 cut(s) 199, 796, 1441
RseI CAYNNNNRTG 3 cut(s) 62, 182, 1409
SaqAI TTAA 3 cut(s) 237, 435, 512
SatI GCNGC 6 cut(s) 682, 750, 849, 1070, 1149, 1224
Sau96I GGNCC 6 cut(s) 173, 263, 350, 694, 894, 900
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 4 cut(s) 106, 354, 692, 898
SduI GDGCHC 2 cut(s) 342, 1140
SfaNI GCATC 4 cut(s) 538, 545, 1035, 1283
SinI GGWCC 2 cut(s) 263, 894
SmiMI CAYNNNNRTG 3 cut(s) 62, 182, 1409
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 634
Sse9I AATT 2 cut(s) 733, 1354
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 7 cut(s) 546, 603, 679, 682, 1105, 1149, 1438
SspMI CTAG 1 cut(s) 873
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 4 cut(s) 104, 352, 690, 896
StyI CCWWGG 2 cut(s) 1297, 1404
TaaI ACNGT 3 cut(s) 382, 497, 756
TaiI ACGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 100, 366, 568
TasI AATT 2 cut(s) 733, 1354
TatI WGTACW 1 cut(s) 795
TauI GCSGC 2 cut(s) 684, 1151
TfiI GAWTC 2 cut(s) 229, 821
Tru1I TTAA 3 cut(s) 237, 435, 512
Tru9I TTAA 3 cut(s) 237, 435, 512
TscAI CASTG 5 cut(s) 40, 502, 649, 838, 1062
TseFI GTSAC 5 cut(s) 4, 686, 829, 914, 1152
TseI GCWGC 4 cut(s) 749, 848, 1069, 1223
Tsp45I GTSAC 5 cut(s) 4, 686, 829, 914, 1152
TspDTI ATGAA 2 cut(s) 772, 977
TspGWI ACGGA 3 cut(s) 425, 902, 1406
TspRI CASTG 5 cut(s) 40, 502, 649, 838, 1062
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 263, 894
XapI RAATTY 2 cut(s) 733, 1354
XceI RCATGY 2 cut(s) 634, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.