Rroxscaffold_5G00370440

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
52168612 .. 52171673
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370440.1

Sequence Viewer

Length: 1287 bp
ATGATTCGTGAGGAGTACCCAAAGCTTGGGAGTGTGTTCACATTGAATCTGTTTCACAAGAAGATTACGTTCTTGATTGGTCCTGAGGTTTCCGCTCACTTTTTCAAGGCGCCGGAGTCTGATCTTAGCCAGCAGGAGGTGTACCAGTTCAATGTGCCCACTTTCGGACCCGGAGTTGTGTTTGATGTGGATTATACGGTGAGGCAGGAACAGTTTAGGTTCTTTACGGAGGCTCTGAGGGTGAATAAGCTCAAGGGATATGTGGATCAGATGGTTACAGAAGCAGAGGATTACTTTTCCAAGTGGGGAGACAGTGGAGAGGTGGACTTGAAGTATGAGCTGGAGCATCTGATTATCCTGACAGCCAGTAGATGCCTCTTGGGTCGTGAAGTTCGTGATAAACTCTTTGATGATGTTTCGTCTTTGTTCCATGAACTTGACAATGGCATGCTTCCCATTAGTGTCATTGCCCCATACCTGCCCATCCCAGCTCACCGCCGCCGTGACCAGGCACGCAAGAAGCTCACAGCAATCTTTGCAAACATCATAAACTCCCGCAGATGTGCTGAAGTGTCTGAGAATGACATGTTGCAATATTTCATCGAGTCTAAGTACAAAAACGGCCGAAAAACAACTGATTCTGAGATCACTGGCTTGCTCATTGCTGCTCTCTTTGCTGGGCAACATACAAGTTCTATCACTTCCACTTGGACTGGGGCTTATCTCCTCCAGAACAAGCAGTACCTATCTGCCGTGTCAGAGGAACAGCAAAGGCTTATGGCTAAGCATGGGAAGAAGATTGACCATGATATATTGTCTGAGATGGATACACTGTATCGTTGCATCAAGGAAGCTCTGAGACTGCATCCTCCACTGATCATGTTGCTGCGACACTCGCATAGCGATTTCAGCGTACAAACTCGTGATGGGAAAGAATATGACATCCCGAAGGGCCACATAGTTGCCACATCCCCAGCTTTTGCCAACCGACTTCCTCATATTTTCAAAAACCCAGACAGCTATGATCCTGATAGATTTGCTGTTGGAAGAGAGGAAGACAAGGCCGCAGGGGCCTTCTCATATATCTCATTCGGAGGTGGCAGGCATGGATGCCTCGGAGAGCCTTTTGCATACCTGCAGATAAAGGCTATATGGAGCCATTTGCTGAGGAACTTTGAACTGGAGCTGGTTTCACCTTTTCCAGAGACTGATTGGAATGCCATGGTTGTCGGTGTGAAAGGAAAGGTGATGGTGCGGTACAAGCGAAGGGAGCTTTCAGCTAATTAA

Protein Analysis

428

Amino Acids

48.99

Weight (kDa)

6.96

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 397 3.3e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 486, 1143
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 6 cut(s) 93, 496, 499, 556, 1065, 1255
AclWI GGATC 2 cut(s) 273, 1019
AcoI YGGCCR 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 6 cut(s) 17, 143, 614, 743, 915, 1259
AfiI CCNNNNNNNGG 4 cut(s) 26, 136, 164, 508
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 6 cut(s) 46, 106, 151, 331, 1006, 1178
AjnI CCWGG 1 cut(s) 507
Alw26I GTCTC 3 cut(s) 303, 853, 1199
AlwI GGATC 2 cut(s) 273, 1019
AlwNI CAGNNNCTG 1 cut(s) 1208
AoxI GGCC 4 cut(s) 622, 952, 1062, 1071
ApeKI GCWGC 2 cut(s) 665, 886
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 4 cut(s) 80, 167, 952, 1071
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 5 cut(s) 211, 253, 485, 1185, 1258
AvaII GGWCC 2 cut(s) 80, 167
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 1062
BbvCI CCTCAGC 1 cut(s) 1166
BbvI GCAGC 2 cut(s) 652, 873
BccI CCATC 5 cut(s) 265, 491, 817, 920, 1243
BceAI ACGGC 3 cut(s) 486, 637, 737
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 820
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 3 cut(s) 303, 853, 1199
BfmI CTRYAG 1 cut(s) 1136
BfoI RGCGCY 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 486, 1143
BfuI GTATCC 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 1070
BisI GCNGC 4 cut(s) 499, 666, 887, 1065
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 4 cut(s) 500, 667, 888, 1066
Bme1390I CCNGG 2 cut(s) 171, 509
Bme18I GGWCC 2 cut(s) 80, 167
BmgT120I GGNCC 4 cut(s) 80, 167, 952, 1071
BmiI GGNNCC 4 cut(s) 111, 169, 1072, 1157
BmrFI CCNGG 2 cut(s) 171, 509
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 5 cut(s) 355, 362, 852, 874, 1100
BmuI ACTGGG 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 1062
BpmI CTGGAG 3 cut(s) 362, 713, 1202
Bpu10I CCTNAGC 1 cut(s) 1166
Bpu1102I GCTNAGC 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 1114, 1221
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 136, 164, 508
Bse1I ACTGG 5 cut(s) 145, 366, 655, 718, 1185
Bse21I CCTNAGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 465, 660
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 1114, 1221
BseGI GGATG 5 cut(s) 483, 865, 942, 968, 1115
BseLI CCNNNNNNNGG 4 cut(s) 26, 136, 164, 508
BseMI GCAATG 2 cut(s) 465, 660
BseMII CTCAG 7 cut(s) 75, 227, 567, 633, 810, 848, 1157
BseNI ACTGG 5 cut(s) 145, 366, 655, 718, 1185
BseRI GAGGAG 2 cut(s) 26, 716
BseSI GKGCMC 1 cut(s) 159
BseX3I CGGCCG 1 cut(s) 622
BseXI GCAGC 2 cut(s) 652, 873
BseYI CCCAGC 3 cut(s) 487, 677, 973
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 4 cut(s) 624, 954, 1064, 1073
BshNI GGYRCC 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 625
BsiSI CCGG 2 cut(s) 113, 171
BslI CCNNNNNNNGG 4 cut(s) 26, 136, 164, 508
BsmAI GTCTC 3 cut(s) 303, 853, 1199
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 4 cut(s) 624, 954, 1064, 1073
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 121, 265, 645, 876, 1024
Bsp1720I GCTNAGC 1 cut(s) 783
Bsp19I CCATGG 1 cut(s) 1221
BspACI CCGC 6 cut(s) 93, 496, 499, 556, 1065, 1255
BspANI GGCC 4 cut(s) 624, 954, 1064, 1073
BspCNI CTCAG 7 cut(s) 76, 228, 568, 634, 811, 849, 1158
BspLI GGNNCC 4 cut(s) 111, 169, 1072, 1157
BspMAI CTGCAG 1 cut(s) 1140
BspMI ACCTGC 2 cut(s) 486, 1143
BspPI GGATC 2 cut(s) 273, 1019
BspT107I GGYRCC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 465, 660
BsrI ACTGG 5 cut(s) 145, 366, 655, 718, 1185
BssECI CCNNGG 2 cut(s) 1114, 1221
BssMI GATC 5 cut(s) 121, 265, 645, 876, 1024
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 1 cut(s) 1221
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 4 cut(s) 199, 213, 314, 834
Bst6I CTCTTC 1 cut(s) 1042
BstACI GRCGYC 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 5 cut(s) 131, 449, 514, 656, 1103
BstDSI CCRYGG 1 cut(s) 1221
BstF5I GGATG 5 cut(s) 483, 865, 942, 968, 1115
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 5 cut(s) 124, 268, 648, 879, 1027
BstMAI GTCTC 3 cut(s) 303, 853, 1199
BstMBI GATC 5 cut(s) 121, 265, 645, 876, 1024
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 7 cut(s) 536, 674, 895, 909, 1070, 1261, 1270
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 2 cut(s) 451, 589
BstSCI CCNGG 2 cut(s) 169, 507
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 652, 873
BstV2I GAAGAC 1 cut(s) 1062
BstZI CGGCCG 1 cut(s) 622
Bsu36I CCTNAGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 4 cut(s) 624, 954, 1064, 1073
BtgI CCRYGG 1 cut(s) 1221
BtsCI GGATG 5 cut(s) 483, 865, 942, 968, 1115
BtsIMutI CAGTG 4 cut(s) 319, 648, 830, 872
BveI ACCTGC 2 cut(s) 486, 1143
Cac8I GCNNGC 5 cut(s) 131, 449, 514, 656, 1103
CaiI CAGNNNCTG 1 cut(s) 1208
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 4 cut(s) 80, 167, 952, 1071
Csp6I GTAC 6 cut(s) 16, 142, 613, 742, 914, 1258
CviAII CATG 8 cut(s) 431, 448, 586, 788, 806, 880, 1106, 1222
CviQI GTAC 6 cut(s) 16, 142, 613, 742, 914, 1258
DinI GGCGCC 1 cut(s) 111
DpnI GATC 5 cut(s) 123, 267, 647, 878, 1026
DpnII GATC 5 cut(s) 121, 265, 645, 876, 1024
EaeI YGGCCR 1 cut(s) 622
EagI CGGCCG 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 1042
EarI CTCTTC 1 cut(s) 1042
EclXI CGGCCG 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 1221
Eco47I GGWCC 2 cut(s) 80, 167
Eco52I CGGCCG 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 1071
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 1221
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 1221
FaeI CATG 8 cut(s) 434, 451, 589, 791, 809, 883, 1109, 1225
FatI CATG 8 cut(s) 430, 447, 585, 787, 805, 879, 1105, 1221
FauI CCCGC 1 cut(s) 563
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 4 cut(s) 499, 666, 887, 1065
FokI GGATG 5 cut(s) 470, 852, 929, 955, 1122
Fsp4HI GCNGC 4 cut(s) 499, 666, 887, 1065
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 499, 666, 887, 1065
GsaI CCCAGC 3 cut(s) 491, 681, 977
GsuI CTGGAG 3 cut(s) 362, 713, 1202
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 4 cut(s) 624, 954, 1064, 1073
HapII CCGG 2 cut(s) 113, 171
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 8 cut(s) 434, 451, 589, 791, 809, 883, 1109, 1225
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 5 cut(s) 4, 46, 116, 605, 638
HpaII CCGG 2 cut(s) 113, 171
HphI GGTGA 5 cut(s) 211, 253, 485, 1185, 1258
Hpy166II GTNNAC 3 cut(s) 39, 142, 325
Hpy8I GTNNAC 3 cut(s) 39, 142, 325
HpyAV CCTTC 3 cut(s) 943, 1084, 1260
HpyCH4III ACNGT 4 cut(s) 199, 213, 314, 834
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 539, 592, 843, 865, 1130, 1138
HpyF10VI GCNNNNNNNGC 7 cut(s) 536, 674, 895, 909, 1070, 1261, 1270
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 8 cut(s) 434, 451, 589, 791, 809, 883, 1109, 1225
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 5 cut(s) 121, 265, 645, 876, 1024
LmnI GCTCC 4 cut(s) 343, 1155, 1183, 1270
Lsp1109I GCAGC 2 cut(s) 652, 873
LweI GCATC 5 cut(s) 355, 362, 852, 874, 1100
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 274, 503
MalI GATC 5 cut(s) 123, 267, 647, 878, 1026
MbiI CCGCTC 1 cut(s) 95
MboI GATC 5 cut(s) 121, 265, 645, 876, 1024
MboII GAAGA 5 cut(s) 73, 805, 808, 1059, 1067
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 1282
Mly113I GGCGCC 1 cut(s) 110
MlyI GAGTC 2 cut(s) 125, 614
MmeI TCCRAC 1 cut(s) 1024
MseI TTAA 1 cut(s) 1285
MspI CCGG 2 cut(s) 113, 171
MspR9I CCNGG 2 cut(s) 171, 509
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 7 cut(s) 536, 674, 895, 909, 1070, 1261, 1270
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 1221
NdeII GATC 5 cut(s) 121, 265, 645, 876, 1024
NlaIII CATG 8 cut(s) 434, 451, 589, 791, 809, 883, 1109, 1225
NlaIV GGNNCC 4 cut(s) 111, 169, 1072, 1157
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 2 cut(s) 451, 589
PaeI GCATGC 1 cut(s) 451
PciI ACATGT 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 1222
PfeI GAWTC 3 cut(s) 4, 46, 638
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 4 cut(s) 500, 667, 888, 1066
PleI GAGTC 2 cut(s) 124, 613
PluTI GGCGCC 1 cut(s) 113
PpsI GAGTC 2 cut(s) 124, 613
PscI ACATGT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 3 cut(s) 487, 677, 973
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 4 cut(s) 111, 169, 1072, 1157
PspPI GGNCC 4 cut(s) 80, 167, 952, 1071
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
PstI CTGCAG 1 cut(s) 1140
PstNI CAGNNNCTG 1 cut(s) 1208
RsaI GTAC 6 cut(s) 17, 143, 614, 743, 915, 1259
RsaNI GTAC 6 cut(s) 16, 142, 613, 742, 914, 1258
SaqAI TTAA 1 cut(s) 1285
SatI GCNGC 4 cut(s) 499, 666, 887, 1065
Sau3AI GATC 5 cut(s) 121, 265, 645, 876, 1024
Sau96I GGNCC 4 cut(s) 80, 167, 952, 1071
SchI GAGTC 2 cut(s) 125, 614
ScrFI CCNGG 2 cut(s) 171, 509
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 5 cut(s) 355, 362, 852, 874, 1100
SfcI CTRYAG 1 cut(s) 1136
SfiI GGCCNNNNNGGCC 1 cut(s) 1070
SfoI GGCGCC 1 cut(s) 111
SinI GGWCC 2 cut(s) 80, 167
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 451
Sse9I AATT 1 cut(s) 1282
SsiI CCGC 6 cut(s) 93, 496, 499, 556, 1065, 1255
SspDI GGCGCC 1 cut(s) 109
SspI AATATT 1 cut(s) 596
StyD4I CCNGG 2 cut(s) 169, 507
StyI CCWWGG 1 cut(s) 1221
TaaI ACNGT 4 cut(s) 199, 213, 314, 834
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 603
TasI AATT 1 cut(s) 1282
TatI WGTACW 1 cut(s) 612
TauI GCSGC 2 cut(s) 501, 1067
TfiI GAWTC 3 cut(s) 4, 46, 638
Tru1I TTAA 1 cut(s) 1285
Tru9I TTAA 1 cut(s) 1285
TscAI CASTG 4 cut(s) 319, 655, 837, 879
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 2 cut(s) 665, 886
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 2 cut(s) 447, 589
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 4 cut(s) 319, 655, 837, 879
Van91I CCANNNNNTGG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 80, 167
XceI RCATGY 2 cut(s) 451, 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.