Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006515

Physical Location & Seq

Genomic Coordinates Reverse (-)

9691499 .. 9691828

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1091900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCTCGATCTGGGAAGCATCTTCCTCCGGTGGTGAATACGTGGCCTGTGTTGGGAGGACTGCTCCGGTTCTTGAAAGGCCCCATTATCATGCTTTGTGAAGAGTATCCGAAGCTCTTGAGTGTGTTCACATTGAATCTTTTTAGCAAGAAGATCACTTTCTTGATTGGTTCTGAGGTGTCTGCCCACTTCTTCACGGCCTCGGAGGCTGATCTTAGCCAGCATGAGGTATACCAGTTCAATGTGTCCACTTTCGGCCCTGGAGTTGTTTTCGATGTGGATTACACAGTGAGACAGGAGCAGATCAAGGTTCTGCATACTCTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008398 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0032451 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070988 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

p450

Protein Analysis

110

Amino Acids

12.33

Weight (kDa)

7.93

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11680
fragaria_vesca	FvH4_4g22540 FvH4_4g22540
malus_domestica	MD00G1206300.v1.1 MD07G1091900.v1.1 MD13G1131600.v1.1 MD16G1141900.v1.1
prunus_persica	Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1 Prupe.1G214000_v2.0.a1
pyrus_communis	pycom16g11240
rosa_chinensis	RchiOBHm_Chr4g0428771
rosa_laevigata	RLG00000007128
rosa_multiflora	Rmu_sc0006510.1_g000004 Rmu_sc0018825.1_g000004 Rmu_sc0024131.1_g000003 Rmu_sc0037508.1_g000001 Rmu_sc0037509.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370440
rosa_rugosa	Rorug04G0228400
rosa_samantha	Rh4AG285700 Rh4BG291600 Rh4CG307400 Rh4DG288700
rosa_wichuraiana	Rw4G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	53, 226
AgsI	TTSAA	3 cut(s)	76, 136, 241
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	9, 286
AoxI	GGCC	4 cut(s)	44, 79, 198, 256
AspS9I	GGNCC	2 cut(s)	80, 257
AsuHPI	GGTGA	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	9, 286
BfuI	GTATCC	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	80, 257
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	201, 259
BsaWI	WCCGGW	2 cut(s)	28, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 226
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	201, 259
BseLI	CCNNNNNNNGG	2 cut(s)	53, 226
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	46, 81, 200, 258
BsiSI	CCGG	2 cut(s)	29, 67
BslI	CCNNNNNNNGG	2 cut(s)	53, 226
BsmAI	GTCTC	2 cut(s)	9, 286
BsnI	GGCC	4 cut(s)	46, 81, 200, 258
Bsp143I	GATC	4 cut(s)	8, 153, 211, 303
BspANI	GGCC	4 cut(s)	46, 81, 200, 258
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	201, 259
BssMI	GATC	4 cut(s)	8, 153, 211, 303
BssNAI	GTATAC	1 cut(s)	232
Bst1107I	GTATAC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	289, 327
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	174, 215
BstKTI	GATC	4 cut(s)	11, 156, 214, 306
BstMAI	GTCTC	2 cut(s)	9, 286
BstMBI	GATC	4 cut(s)	8, 153, 211, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	46, 81, 200, 258
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	80, 257
CviAII	CATG	2 cut(s)	91, 224
CviJI	RGCY	7 cut(s)	46, 81, 115, 200, 209, 219, 258
CviKI_1	RGCY	7 cut(s)	46, 81, 115, 200, 209, 219, 258
DdeI	CTNAG	2 cut(s)	174, 215
DpnI	GATC	4 cut(s)	10, 155, 213, 305
DpnII	GATC	4 cut(s)	8, 153, 211, 303
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	94, 227
FaiI	YATR	4 cut(s)	92, 225, 232, 318
FatI	CATG	2 cut(s)	90, 223
FblI	GTMKAC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	46, 81, 200, 258
HapII	CCGG	2 cut(s)	29, 67
Hin1II	CATG	2 cut(s)	94, 227
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	29, 67
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	129, 232, 249
Hpy188I	TCNGA	3 cut(s)	111, 175, 205
Hpy188III	TCNNGA	4 cut(s)	6, 73, 118, 163
Hpy8I	GTNNAC	3 cut(s)	129, 232, 249
HpyCH4III	ACNGT	2 cut(s)	289, 327
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	174, 215
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	94, 227
Kzo9I	GATC	4 cut(s)	8, 153, 211, 303
LmnI	GCTCC	2 cut(s)	69, 298
LpnPI	CCDG	8 cut(s)	42, 60, 80, 233, 246, 248, 273, 281
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	41
MalI	GATC	4 cut(s)	10, 155, 213, 305
MboI	GATC	4 cut(s)	8, 153, 211, 303
MboII	GAAGA	4 cut(s)	14, 113, 163, 184
MnlI	CCTC	6 cut(s)	36, 50, 169, 199, 211, 220
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	2 cut(s)	29, 67
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	4 cut(s)	8, 153, 211, 303
NlaIII	CATG	2 cut(s)	94, 227
NlaIV	GGNNCC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	80, 257
RseI	CAYNNNNRTG	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	8, 153, 211, 303
Sau96I	GGNCC	2 cut(s)	80, 257
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	5 cut(s)	44, 117, 180, 231, 312
SfaNI	GCATC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	289, 327
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	7, 273
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	1 cut(s)	294
TspRI	CASTG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.