MD01G1010200.v1.1

IDA-LIKE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014967
Physical Location & Seq
Forward (+)
5948597 .. 5949095
499 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1010200.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGCTTCAAGTAGACGGCCTCTAGTTGTACTCGTATCGGTATGGCTTTTTGTGACGTTCATCTTCATTCCTCACGGAAATTGCCATGCCTCACCCACAACCGCCGCCCAAGTCTTCAGGTTCAAACCCAAGTACATGCAGAATTCTGGCCACTTTTTGGGCTTCTTTCCGAGAAGGATACCTATACCGGCTTCTGGCCCCTCAAGGAAGCACAATGGTATCGGCTTAAGAAGTTGGAGATCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

12.0

Isoelectric Point (pI)

66.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014967)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18715 AT5G09805 AT5G64667
fragaria_vesca FvH4_1g23990
malus_domestica MD01G1010200.v1.1
prunus_persica Prupe.6G159700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120121
rosa_laevigata RLG00000018522 RLG00000036322
rosa_roxburghii Rroxscaffold_2G00123710 Rroxscaffold_6G00392390
rosa_rugosa Rorug02G0226900
rosa_samantha Rh1AG360600 Rh2AG283500 Rh2BG294800 Rh2DG308500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 13
AciI CCGC 2 cut(s) 102, 105
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 100
AfaI GTAC 2 cut(s) 30, 134
AfiI CCNNNNNNNGG 2 cut(s) 157, 194
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 9, 124
AoxI GGCC 3 cut(s) 17, 148, 196
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 84, 234
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BalI TGGCCA 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 171
BfaI CTAG 1 cut(s) 23
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 194
Bse118I RCCGGY 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 157, 194
BshFI GGCC 3 cut(s) 19, 150, 198
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 157, 194
BsnI GGCC 3 cut(s) 19, 150, 198
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 2 cut(s) 102, 105
BspANI GGCC 3 cut(s) 19, 150, 198
BspLI GGNNCC 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssMI GATC 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 226
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 106
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 3 cut(s) 19, 150, 198
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 29, 133
CviAII CATG 2 cut(s) 86, 136
CviJI RGCY 8 cut(s) 5, 19, 46, 150, 162, 191, 198, 225
CviKI_1 RGCY 8 cut(s) 5, 19, 46, 150, 162, 191, 198, 225
CviQI GTAC 2 cut(s) 29, 133
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 142
FaeI CATG 2 cut(s) 89, 139
FaiI YATR 4 cut(s) 43, 87, 137, 185
FatI CATG 2 cut(s) 85, 135
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 3 cut(s) 19, 150, 198
HapII CCGG 1 cut(s) 188
Hin1II CATG 2 cut(s) 89, 139
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 84, 234
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 2 cut(s) 89, 139
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 103, 132, 180, 201
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 55, 106
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 79, 142
MluNI TGGCCA 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 4 cut(s) 30, 81, 100, 211
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 1 cut(s) 188
NdeII GATC 1 cut(s) 239
NlaIII CATG 2 cut(s) 89, 139
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 2 cut(s) 30, 134
RsaNI GTAC 2 cut(s) 29, 133
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 197
SetI ASST 3 cut(s) 59, 122, 184
SmlI CTYRAG 2 cut(s) 202, 226
SmoI CTYRAG 2 cut(s) 202, 226
Sse9I AATT 2 cut(s) 79, 142
SsiI CCGC 2 cut(s) 102, 105
SspMI CTAG 1 cut(s) 23
TaiI ACGT 1 cut(s) 59
TasI AATT 2 cut(s) 79, 142
TatI WGTACW 2 cut(s) 28, 132
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 49, 55
TspGWI ACGGA 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 226
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.