RLG00000036322

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014967
Physical Location & Seq
Reverse (-)
79185154 .. 79186515
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036322

Sequence Viewer

Length: 402 bp
ATGAGTCGAGGGAGGAGGAAGTTGCTGTCGACGACGGATCTGAGGTCATTCCCTGCTGGTCTGTTGGTTCCGTTCTATTTTGGGTCGTATGGATCTGATTTGGGGTGGAGGTGGTATGGTGTTCCTTGCTCGCATGAAGGATATGATGGGGTGATGGCAGAGGCGATCTGGCTTAGGCGGTCGTGTGGCGGAGACGGTGGCAGTTCGGGGGTGATAGTGTTGGGTTTGAGTCGCGCTTTGATGGTCGGCGGTGGTAAGGAATGTTTGCCGGGAAGATGGAAGGCAGGAGAGATGGCTGGCGATCGGTGTAGGGTAGACGGAGCGGCAGTTGGGTCGGGTCTAGGCCAGTGCATGACTGTCACAAAATTATCACTTCCAGATCCTCCAATGATGAGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.12

Weight (kDa)

9.17

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014967)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18715 AT5G09805 AT5G64667
fragaria_vesca FvH4_1g23990
malus_domestica MD01G1010200.v1.1
prunus_persica Prupe.6G159700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120121
rosa_laevigata RLG00000018522 RLG00000036322
rosa_roxburghii Rroxscaffold_2G00123710 Rroxscaffold_6G00392390
rosa_rugosa Rorug02G0226900
rosa_samantha Rh1AG360600 Rh2AG283500 Rh2BG294800 Rh2DG308500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 2 cut(s) 29, 315
AccII CGCG 1 cut(s) 234
AciI CCGC 4 cut(s) 178, 189, 249, 323
AclWI GGATC 3 cut(s) 45, 100, 374
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 3 cut(s) 45, 100, 374
AoxI GGCC 1 cut(s) 343
AspLEI GCGC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 163, 223
BccI CCATC 5 cut(s) 140, 148, 235, 270, 286
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 341
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 2 cut(s) 182, 304
BshFI GGCC 1 cut(s) 345
BsiEI CGRYCG 2 cut(s) 182, 304
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 5 cut(s) 37, 92, 165, 301, 379
BspACI CCGC 4 cut(s) 178, 189, 249, 323
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 3 cut(s) 45, 100, 374
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 346
BssMI GATC 5 cut(s) 37, 92, 165, 301, 379
Bst4CI ACNGT 2 cut(s) 197, 358
BstC8I GCNNGC 2 cut(s) 131, 298
BstDEI CTNAG 2 cut(s) 41, 173
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 5 cut(s) 40, 95, 168, 304, 382
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 37, 92, 165, 301, 379
BstMCI CGRYCG 2 cut(s) 182, 304
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 37, 92, 379
BstYI RGATCY 3 cut(s) 37, 92, 379
BsuRI GGCC 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 131, 298
CfoI GCGC 1 cut(s) 236
CviAII CATG 2 cut(s) 134, 352
CviJI RGCY 3 cut(s) 172, 296, 345
CviKI_1 RGCY 3 cut(s) 172, 296, 345
DdeI CTNAG 2 cut(s) 41, 173
DpnI GATC 5 cut(s) 39, 94, 167, 303, 381
DpnII GATC 5 cut(s) 37, 92, 165, 301, 379
EciI GGCGGA 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 137, 355
FaiI YATR 5 cut(s) 90, 117, 135, 144, 353
FatI CATG 2 cut(s) 133, 351
FblI GTMKAC 2 cut(s) 29, 315
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 137, 355
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 4, 229
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 163, 223
Hpy166II GTNNAC 2 cut(s) 30, 316
Hpy188I TCNGA 2 cut(s) 42, 97
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 30, 316
Hpy99I CGWCG 2 cut(s) 34, 37
HpyAV CCTTC 2 cut(s) 131, 274
HpyCH4III ACNGT 2 cut(s) 197, 358
HpyCH4V TGCA 1 cut(s) 351
HpyF3I CTNAG 2 cut(s) 41, 173
Hsp92II CATG 2 cut(s) 137, 355
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 5 cut(s) 37, 92, 165, 301, 379
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 8 cut(s) 42, 66, 154, 270, 282, 282, 359, 390
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 358
MalI GATC 5 cut(s) 39, 94, 167, 303, 381
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 37, 92, 165, 301, 379
MboII GAAGA 1 cut(s) 285
MflI RGATCY 3 cut(s) 37, 92, 379
MluCI AATT 1 cut(s) 365
MlyI GAGTC 2 cut(s) 13, 238
MnlI CCTC 6 cut(s) 6, 9, 36, 102, 154, 393
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 234
NciI CCSGG 1 cut(s) 270
NdeII GATC 5 cut(s) 37, 92, 165, 301, 379
NlaIII CATG 2 cut(s) 137, 355
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 325
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 12, 237
PpsI GAGTC 2 cut(s) 12, 237
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 3 cut(s) 37, 92, 379
PvuI CGATCG 1 cut(s) 304
SalI GTCGAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 5 cut(s) 37, 92, 165, 301, 379
SchI GAGTC 2 cut(s) 13, 238
ScrFI CCNGG 1 cut(s) 270
SetI ASST 3 cut(s) 47, 113, 401
Sse9I AATT 1 cut(s) 365
SsiI CCGC 4 cut(s) 178, 189, 249, 323
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 197, 358
TaqI TCGA 2 cut(s) 7, 29
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 326
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 3 cut(s) 50, 60, 333
TspRI CASTG 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 29, 315
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.