Rh1AG360600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014967
Physical Location & Seq
Forward (+)
59571829 .. 59572192
364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG360600.1

Sequence Viewer

Length: 285 bp
ATGGATCTGATTTGGGGTGGAGGTGGTATGGTGTTCCTCGCTCGCATGAGGGATATGATGGGGCAATGGCAGAGACAATCCGGCTTAGGCGGTCGTGTGGCGGAGACGGTGGCAGTGCTGGGTTTGAGTCGGGCTTCGATGGTCGGCAGTGGTAAGGAATACTTGCCAGGAAGATGGAGGGCAAGAGAGATGGCTAGCGATCAGAGTGGGGTAGATGGAGCTGCAGTTGGGTCGGGTCTAGGTTGTTGGGCCCTTGTTGGTGGGCCGTTGTTACTAGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.86

Weight (kDa)

9.29

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014967)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18715 AT5G09805 AT5G64667
fragaria_vesca FvH4_1g23990
malus_domestica MD01G1010200.v1.1
prunus_persica Prupe.6G159700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120121
rosa_laevigata RLG00000018522 RLG00000036322
rosa_roxburghii Rroxscaffold_2G00123710 Rroxscaffold_6G00392390
rosa_rugosa Rorug02G0226900
rosa_samantha Rh1AG360600 Rh2AG283500 Rh2BG294800 Rh2DG308500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 101
AclWI GGATC 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 274
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 67, 98
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 249, 263
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 249, 250, 263
AsuNHI GCTAGC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 208
BccI CCATC 5 cut(s) 52, 133, 168, 184, 209
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 67, 98
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 3 cut(s) 195, 239, 275
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 249, 250, 263
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 251, 265
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 67, 98
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 251, 265
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 4, 199
BspACI CCGC 2 cut(s) 90, 101
BspANI GGCC 2 cut(s) 251, 265
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 71
BssMI GATC 2 cut(s) 4, 199
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 43, 196
BstDEI CTNAG 1 cut(s) 85
BstKTI GATC 2 cut(s) 7, 202
BstMAI GTCTC 2 cut(s) 67, 98
BstMBI GATC 2 cut(s) 4, 199
BstMCI CGRYCG 1 cut(s) 94
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 174
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 251, 265
BtsI GCAGTG 2 cut(s) 120, 154
BtsIMutI CAGTG 2 cut(s) 120, 154
Cac8I GCNNGC 2 cut(s) 43, 196
Cfr13I GGNCC 3 cut(s) 249, 250, 263
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 84, 134, 194, 221, 251, 265
CviKI_1 RGCY 6 cut(s) 84, 134, 194, 221, 251, 265
DdeI CTNAG 1 cut(s) 85
DpnI GATC 2 cut(s) 6, 201
DpnII GATC 2 cut(s) 4, 199
EciI GGCGGA 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 29, 47, 56
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 195, 239, 275
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 2 cut(s) 251, 265
HapII CCGG 1 cut(s) 81
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 9, 204
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 4, 199
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 94, 104, 153, 180
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 3 cut(s) 195, 239, 275
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 6, 201
MboI GATC 2 cut(s) 4, 199
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 4 cut(s) 14, 42, 47, 171
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NdeII GATC 2 cut(s) 4, 199
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 251
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 249, 250, 263
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 4, 199
Sau96I GGNCC 3 cut(s) 249, 250, 263
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 253
SetI ASST 3 cut(s) 25, 223, 244
SfcI CTRYAG 1 cut(s) 222
SpeI ACTAGT 1 cut(s) 274
SsiI CCGC 2 cut(s) 90, 101
SspMI CTAG 3 cut(s) 195, 239, 275
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 137
TscAI CASTG 2 cut(s) 120, 154
TseI GCWGC 1 cut(s) 221
TspRI CASTG 2 cut(s) 120, 154
XspI CTAG 3 cut(s) 195, 239, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.