RLG00000018522

IDA-LIKE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014967
Physical Location & Seq
Reverse (-)
31290517 .. 31293188
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018522

Sequence Viewer

Length: 594 bp
ATGGCCTCATGTAGAAGAAGAGTACCTGTAACAAAGTTTCTACTTGCTGTATGGCTTTTCTTGACATTCATCTTCATCCTTGTCAACTGCAGCAATGGCACTAGATTAATCACCCAGCAGCATAACCAAGAGCAGCAGGAGCTGGATGTGTTCAAGATGAAGCCCAAGAATCACCAGTATTCAGGCCACTTTCTAGGGTTCTTGCCAAGAAGAATACCAATACCAGCTTCTGGCCCCTCAAGGAAGCATAATGTGGATCTGAGGTCATTCCCTGCTGGTCTGGTGGGTGGGGTGTTCTTGCTGGCACAGGGTTTGGGATCACTTGAGGATGACAATCTTGTGGGGGTGAGGTTGGCTGTTATGCTGCTTAATTCCGGTCAGATGGTTCCAATCTATTTTGGGTCGTATGGATCTAATTTGGGGTGGAGGTGGTGTGGTGTTCTTCGCTCACATGAGGGATATGATGGGGCGATGGCAGAGGCAATCCGGCATAAGCAGTCGTGCAACGGAGACGATGGCAGTTTGGGGGTGGCTGTGCTGGGTTTGAGTTGGGCTTCTATGGTCCCCGGTGATCTTCTCACTTCCTTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.61

Weight (kDa)

9.23

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014967)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18715 AT5G09805 AT5G64667
fragaria_vesca FvH4_1g23990
malus_domestica MD01G1010200.v1.1
prunus_persica Prupe.6G159700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120121
rosa_laevigata RLG00000018522 RLG00000036322
rosa_roxburghii Rroxscaffold_2G00123710 Rroxscaffold_6G00392390
rosa_rugosa Rorug02G0226900
rosa_samantha Rh1AG360600 Rh2AG283500 Rh2BG294800 Rh2DG308500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AclWI GGATC 3 cut(s) 264, 325, 418
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AluBI AGCT 2 cut(s) 142, 227
AluI AGCT 2 cut(s) 142, 227
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 3 cut(s) 264, 325, 418
AlwNI CAGNNNCTG 2 cut(s) 142, 230
AoxI GGCC 3 cut(s) 3, 184, 232
ApeKI GCWGC 4 cut(s) 90, 118, 133, 364
AseI ATTAAT 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 233, 562
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 103, 164, 358, 581
AvaII GGWCC 1 cut(s) 562
BbvI GCAGC 4 cut(s) 102, 130, 145, 351
BccI CCATC 4 cut(s) 376, 458, 466, 509
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 2 cut(s) 102, 194
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 4 cut(s) 91, 119, 134, 365
BlsI GCNGC 4 cut(s) 92, 120, 135, 366
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 233, 562
BmiI GGNNCC 3 cut(s) 235, 387, 564
BmrFI CCNGG 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 223, 344
BpuMI CCSGG 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 565, 585
BsaWI WCCGGW 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 565, 585
BseGI GGATG 3 cut(s) 75, 151, 334
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 4 cut(s) 102, 130, 145, 351
BseYI CCCAGC 2 cut(s) 114, 538
BshFI GGCC 3 cut(s) 5, 186, 234
BsiSI CCGG 3 cut(s) 375, 487, 567
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 504
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 3 cut(s) 5, 186, 234
Bsp143I GATC 4 cut(s) 256, 317, 410, 571
BspANI GGCC 3 cut(s) 5, 186, 234
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 235, 387, 564
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 3 cut(s) 264, 325, 418
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 565, 585
BssMI GATC 4 cut(s) 256, 317, 410, 571
BssT1I CCWWGG 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 3 cut(s) 75, 151, 334
BstKTI GATC 4 cut(s) 259, 320, 413, 574
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 4 cut(s) 256, 317, 410, 571
BstMWI GCNNNNNNNGC 2 cut(s) 96, 139
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 4 cut(s) 102, 130, 145, 351
BstX2I RGATCY 2 cut(s) 256, 410
BstYI RGATCY 2 cut(s) 256, 410
BsuRI GGCC 3 cut(s) 5, 186, 234
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 3 cut(s) 75, 151, 334
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 2 cut(s) 142, 230
Cfr13I GGNCC 2 cut(s) 233, 562
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 9, 452
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 260
DpnI GATC 4 cut(s) 258, 319, 412, 573
DpnII GATC 4 cut(s) 256, 317, 410, 571
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 2 cut(s) 12, 455
FaqI GGGAC 1 cut(s) 548
FatI CATG 2 cut(s) 8, 451
Fnu4HI GCNGC 4 cut(s) 91, 119, 134, 365
FokI GGATG 3 cut(s) 62, 158, 341
Fsp4HI GCNGC 4 cut(s) 91, 119, 134, 365
FspBI CTAG 2 cut(s) 102, 194
GluI GCNGC 4 cut(s) 91, 119, 134, 365
GsaI CCCAGC 2 cut(s) 118, 542
HaeIII GGCC 3 cut(s) 5, 186, 234
HapII CCGG 3 cut(s) 375, 487, 567
Hin1II CATG 2 cut(s) 12, 455
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 169
HpaII CCGG 3 cut(s) 375, 487, 567
HphI GGTGA 4 cut(s) 103, 164, 358, 581
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 261, 381
Hpy188III TCNNGA 2 cut(s) 61, 154
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 90, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 139
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 2 cut(s) 12, 455
Kzo9I GATC 4 cut(s) 256, 317, 410, 571
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 4 cut(s) 102, 130, 145, 351
MaeI CTAG 2 cut(s) 102, 194
MaeIII GTNAC 1 cut(s) 28
MalI GATC 4 cut(s) 258, 319, 412, 573
MboI GATC 4 cut(s) 256, 317, 410, 571
MboII GAAGA 6 cut(s) 27, 30, 64, 222, 434, 566
MflI RGATCY 2 cut(s) 256, 410
MluCI AATT 2 cut(s) 370, 415
MnlI CCTC 8 cut(s) 16, 247, 255, 319, 342, 420, 448, 472
MseI TTAA 2 cut(s) 107, 369
MspI CCGG 3 cut(s) 375, 487, 567
MspR9I CCNGG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 96, 139
NciI CCSGG 1 cut(s) 567
NdeII GATC 4 cut(s) 256, 317, 410, 571
NlaIII CATG 2 cut(s) 12, 455
NlaIV GGNNCC 3 cut(s) 235, 387, 564
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 4 cut(s) 92, 120, 135, 366
PshBI ATTAAT 1 cut(s) 107
PspFI CCCAGC 2 cut(s) 114, 538
PspN4I GGNNCC 3 cut(s) 235, 387, 564
PspPI GGNCC 2 cut(s) 233, 562
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 2 cut(s) 142, 230
PsuI RGATCY 2 cut(s) 256, 410
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 107, 369
SatI GCNGC 4 cut(s) 91, 119, 134, 365
Sau3AI GATC 4 cut(s) 256, 317, 410, 571
Sau96I GGNCC 2 cut(s) 233, 562
ScrFI CCNGG 1 cut(s) 567
SetI ASST 6 cut(s) 28, 144, 229, 266, 353, 431
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 562
SmlI CTYRAG 2 cut(s) 238, 323
SmoI CTYRAG 2 cut(s) 238, 323
Sse9I AATT 2 cut(s) 370, 415
SspMI CTAG 2 cut(s) 102, 194
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 585
TasI AATT 2 cut(s) 370, 415
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 107, 369
Tru9I TTAA 2 cut(s) 107, 369
TseI GCWGC 4 cut(s) 90, 118, 133, 364
TspDTI ATGAA 3 cut(s) 58, 64, 173
TspGWI ACGGA 1 cut(s) 522
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 562
VspI ATTAAT 1 cut(s) 107
XspI CTAG 2 cut(s) 102, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.