Rroxscaffold_2G00123710

IDA-LIKE 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
57595383 .. 57603048
7666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123710.1

Sequence Viewer

Length: 303 bp
ATGGCCTCATGTAGAAGAAGAGTACCTGTAACAAAGTTTCTACTTGCTGTATGGCTTTTCTTGACATTCATCTTCATCCTTGTCAACTGCAGCCATGGCTCTAGATTAATCACCCAGCAGCATAACCAAGAGCAGCAGGAGCTGGATGTGTTCAAGATAAAGCCGAAGAATCACCAGTATTCAGGCCACTTTCTAGGGTTCTTGCCAAGAAGAATACCAATACCAGCTTCTGGCCCCTCAAGGAAGCATAATGGGTTTGGATGGAGACTTATCGACTTAGGGTCATTGAAACCAACATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.53

Weight (kDa)

10.98

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014967)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 154, 289
AhdI GACNNNNNGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AluBI AGCT 2 cut(s) 142, 227
AluI AGCT 2 cut(s) 142, 227
Alw26I GTCTC 1 cut(s) 259
AlwNI CAGNNNCTG 2 cut(s) 142, 230
AoxI GGCC 3 cut(s) 3, 184, 232
ApeKI GCWGC 3 cut(s) 90, 118, 133
AseI ATTAAT 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 103, 164
BbvI GCAGC 3 cut(s) 102, 130, 145
BccI CCATC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 102, 194
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 3 cut(s) 91, 119, 134
BlsI GCNGC 3 cut(s) 92, 120, 135
BmeRI GACNNNNNGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 75, 151, 266
BseLI CCNNNNNNNGG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 102, 130, 145
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 3 cut(s) 5, 186, 234
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 3 cut(s) 5, 186, 234
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 3 cut(s) 5, 186, 234
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 92
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 75, 151, 266
BstMAI GTCTC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 96, 139
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 102, 130, 145
BsuRI GGCC 3 cut(s) 5, 186, 234
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 75, 151, 266
CaiI CAGNNNCTG 2 cut(s) 142, 230
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 9, 95
CviJI RGCY 9 cut(s) 5, 55, 93, 99, 142, 163, 186, 227, 234
CviKI_1 RGCY 9 cut(s) 5, 55, 93, 99, 142, 163, 186, 227, 234
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 277
DriI GACNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 12, 98
FaiI YATR 6 cut(s) 10, 52, 96, 123, 249, 301
FatI CATG 2 cut(s) 8, 94
Fnu4HI GCNGC 3 cut(s) 91, 119, 134
FokI GGATG 3 cut(s) 62, 158, 273
Fsp4HI GCNGC 3 cut(s) 91, 119, 134
FspBI CTAG 2 cut(s) 102, 194
GluI GCNGC 3 cut(s) 91, 119, 134
GsaI CCCAGC 1 cut(s) 118
HaeIII GGCC 3 cut(s) 5, 186, 234
Hin1II CATG 2 cut(s) 12, 98
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 169
HphI GGTGA 2 cut(s) 103, 164
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 61, 102, 154
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 139
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 2 cut(s) 12, 98
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 8 cut(s) 39, 122, 128, 128, 168, 188, 216, 237
Lsp1109I GCAGC 3 cut(s) 102, 130, 145
MaeI CTAG 2 cut(s) 102, 194
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 5 cut(s) 27, 30, 64, 178, 222
MnlI CCTC 2 cut(s) 16, 247
MseI TTAA 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 96, 139
NcoI CCATGG 1 cut(s) 94
NlaIII CATG 2 cut(s) 12, 98
NlaIV GGNNCC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 3 cut(s) 92, 120, 135
PshBI ATTAAT 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 2 cut(s) 142, 230
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 3 cut(s) 91, 119, 134
Sau96I GGNCC 1 cut(s) 233
SetI ASST 3 cut(s) 28, 144, 229
SfcI CTRYAG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SspMI CTAG 2 cut(s) 102, 194
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 1 cut(s) 273
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseI GCWGC 3 cut(s) 90, 118, 133
TspDTI ATGAA 2 cut(s) 58, 64
Van91I CCANNNNNTGG 1 cut(s) 230
VspI ATTAAT 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 101
XspI CTAG 2 cut(s) 102, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.